BtaINT0141669 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000703 | ST6GAL2
Description
Bos taurus ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 (ST6GAL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001008668]
Coordinates
chr11:45441696-45449212:+
Coord C1 exon
chr11:45441696-45442602
Coord A exon
chr11:45442603-45449114
Coord C2 exon
chr11:45449115-45449212
Length
6512 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
TTGTCACATGTGTCCCTCAGATT
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTCCAGGTCGCCATCTCAGGACACAGGCGCTAACCCCGTGGACCTGCCATGAAACCGCACCTGAAGCAATGGAGACAAGGAATGCTCTGCGGGGTGTTTGCATGGGGGCTCTTCTTTGTGGTGATCTTCCTCTACTTCACCGACAGCAGCCCAGCCAAGCCTGCGCCCAGCTCCTTCTCCTTTCTGGAGACCCGGAGGCTGCTGCCCGCACAAGGGAGGCAGCGGGCCATTATGGGGGCCTCAGAGGGCCTGCCCGAGGGCGCGGACTTGCGGCGGGGGTCTCCCCGGGGACTCCCATCTGGCCCCCTGCGGACATGGGCCGGAGATGGCTTTGAACGTGAACAAGAGTTTCTTTCGGTCCAGACAGGGAGAACGTCCCTAAGCTCTTTTGCCCCGGAGGACTCCGCTCCGGGCACGTCGGGGCGCCTCTTCCCTGGGGACCCAGGCCCGGAGGGGGCTCGGCCGCCACGCGCAGCCCCCGGACGGCGGGCAAAGCGAGGGCCACGGAGGCAAAGCCTGAGCGCGCGGGGCGAGGACGGGGAGCGGCTGTACTCGTCCATGTCCCGGGCCTTGCTGCGACGGCTCTGGAAGGGCGATGCGTCGGCGCGCATGCTGCACCCGCGTCTGCAGAAGGCCATGGGTGCCTACCTGCGCGCCAACAAGCACGGCGTGCGCTTCCGGGGGCGCCGCGCATCCGGGCGGAGCCGCACCGAGCTGCTGTGCGCGTTGCGGGGCCGCGTGCAGGTGCGCACCCTGGACGGCACTGAGCCGCCCTTCTCGGCACTCGGCTGGCGCGCACTGGTCCCTCCGGTGCCACTCAGCCGGCTGCTCCCGCGCAGGCTCCGGACCTGCGCCGTGGTCACGTCGGCAGGCGCCATCCTCAACTCATCTCTGGGCGAGGAGATAG
Seq A exon
GTGGGTCCCCGAGGCCACCCGACCCCTACCCCCAGGGCGGCCAGTCTGACACTGTGTTTCTGGAGAGTCTTGGGTCTTCTTTCCCTGGGACCGAATGAACCCCGGTGGATCCAGCAGAGGTCTCCTTTTATTGTTATTTATTCGCTAAGTCATATCCGACTCTTTCCGACCCCATGGACTGCAGGCCACCAGGCTCCTCTGTCCCCAAGCAGATTCCCCAAGCAAGAATACTGGAATAGGTATTCTTCCTGGAATACTGGAATACTGGAATGGGTAGTCATTCCCTTCTCCAGGGATCGAACTGCATCTCCTGTGTCTCCTGCATTGCTGTAGAGAGAAAGGTTAATTTTAAGGCCTCCTCCCCGCCCTTATGGGGACTGGGAAACCTGAAGGCCACTGGACAGGCAGGTAGGCTGTCTGGAAATACATGTAAGGGTTGTTGTTGCAGCCTGGAGCCCCAGATTTGTGGGGCATGCTGGCAGCAGGCAAGTGAGGAGGGTTCCCACATCTAGATGCAGAGTCCCTTCTCAAGAAACTGCAGTCTAGTTTCAGGCCCTCGACACCCTTGTGACCAGCCCAGCCAGCTGCAGCACCGGTGATCCGGTAGCTCCTCCACTCCTTAGGCAGACACGTGGCCCCTCCTCTGGGCAGGTTTCTGTACTAGGTGCTAAGAAATCAAGTGCCTACTGGACGCAGCCTTGGCCTCGAGGCCAGATGTAAAACCACGCCCCTGTAACTCCTCACGGTGGACGGTGTTAGCTCAGCCCCCCTGGACGCAATCTGCAGGGGTCACTGCCCACTGGACAGAAAGGAGTCATCGCCATCTCTGGGGCCGGGGCATTTTCCATGTCCTCTAGGAGTGGCTGATGCCCCATCACCAGGCTGCACAGCCAGACCTACTCCCACAGGGTCTCGGCAATGAGGCTGAATCTGAAATTCTTAACAAGTTGAAAAAAAACAAAGCTCAAGCCTGGGCTTGCGGCCTGGAGTCCCAGTGTCCCCGTGCTGACATTAAGCAGGCTCATAATCACGTTGTCCGAGTGTCACAGAAACTTGCGGCCAAAGCTGAGCAGAGCGGCTGCTTCCAATTAGGAGGGAGCTCTGGCTCAGGGGCCCCTGGGGTGAAGTAAAGCCACACTTCCCTCTGGTTCCCAGGACATGATTAATCACGGAAGGAGGAATTTAACCAGCATGCTTTAAAGCAGGCGCCGACTTGCTCTTGTTTTTTTTTATTTTTGCTTTGTTTTAAGCCCCACTGCCTCCTACCTGTGTGTTTGCATTGCTTTCATCCATCAGGCAGAATTCCCTCACTCTTTATTTGGGCGTAAATATCCCCAACCAGAGTCTTATAAATTCTCTTCTATTTGACCAGAGTCTTATAAATTCTTTTCTGTTCAGAATTCAGAAGAGAGTGTGAATGGCCCTGGGAATTCCATGTTTCTGGGGAACACGATGTGTCAGTTATATCTTTCTTAGTTTCTGGCAACCAGATTTAATTGACAGCATCTGCGCTCACACAAAGGTTCATGTTTAGAATCGTAGAAAGGTACGTGAAGAACCAACACTTGGAAATTTTTTAAAATTCTCTATTGTTTTGCTTCGTTTCCTTTGAATCCAGTTTTGTATCTGCCTTTTTAAGAGTATATAATATAGCACAATTCCATTTGTAAAGACAAGAAAGAAGCCTTTCATTTTCATAAGCTGGCATCTCAGCATCAGCCCTCATGATGCCAGGTGCTGACATGAACTGAATGTACACACACTTATAAATACACAGTTGTTAGCACCTCTCTTGATGAGAACAAAGTCACAGAGCCAGTTTCTTCAGGAAGCTTGGAATTGGGCATGCTTTGTGTTAGTGGCTCAGTAGTGTCTGACTCTCTGCAACCCCATGGACTGTAGCCCACCAGGCTTCCTTGTCCATGGAATTCGCCAGGCAGGAATATAAGAGTGGATAACCGTTCTCTTCTCCAGGGGAGCTTCCTGACGCAGGGATTGAACCCGCGTCTCCCTCATTGCAGGCAGATTCTCTACCATCTGAGCCACCAATAGCGCATGCTGTACTGTTTAACTAAACTCATCTTAACCCCTAAGCATCTATTGTACTTGTGAATTGGCTAAGTGAAGATCAGAAGACTTGCAGGAGGTTCTGGTCTTATGAGGGCAGAGCTAGAAAATCTCCCTGGGCCCCCTCCCCAAGGGAACCAGGGATGCCCCGGGGTTGCCTCAGCAGCTCCCTCTTCTGGCTGCTGCGGTGCCACAGTGTTTCCCCAATTCCGTTGCACTGAGGCATACCTTGTCATTGTTTTTGAGAACAGTGTAGCAGCTGTAAACACCTCCACTTTGAATATGTTACTGAAAAGCAAAGTGAACTGTTTTGGAAACATGGAACACTCATTGCTAGAGTCATGAGATGATCTTTTTTCACCTGTTCTGTAAATAATAATTATTTGTGAGCTCACTAGCAGCCATCCTGGGGAAGCACGCTCTAGACAAGACACGTCTGCCCTAAGCTAACAGGCATCGCCTGGAATGCGAGATCAAGTCTGTTCCTTGAAATTCAGATTCCGGCCAGCATGTGGGAAATGGGAGGATGGAGAGAAGCCTTGCAGGGAGGGGACATCTTCCTGGGTGAACTTGGAATTTGGCATCCTGTTACCATTGCTTTAAAAAGCAAGAGAGCAGGTCATATAGTCATTCAACAACCATGGTCCCAAACTCTTCACCAGCCACTGTGCTCACCACTAGTGATGGAAAGATGGATGAGGCCCAGCCCTAACCTCAAATCTTCTGCTGTCTGGTGGGAAAGACAGACTATAAAGAGACACTTCACAATTAGAAGGACAGAGAGACACGTAGACAGACAGGGAAGAGATGAACTTGGAATCTGGCCACCCCTCGAGGGCTGATGTCTGAGGCCAGCTGAGCAGGTGGACGAGAAAAACAGTTCAGTGTGTGGGTGATGAGGGAGAGCACAAGAGGCTGGGGGTGGAGAGCCAACAGATAAGCTGGACTAGTGGCAAGTCAGCCCCATGCTCTCACATGTCATTCTCCAGAAGTTAGACTTCACATAATGATCATAATAGTAGGTACCACGTATAGTTGGGTGGCATCATCGGGCTTAATGGATATGAGTCTGAGCAAACTCCGAGAGATAGTGAAGGACAGGGAAGCCTGGAGAGCTGCAGTCCATGGGGCCACAAAGAGTTGGACACGACTTAGTGACTGAACAACAGCAATGTGTAGGGTCTTCCCTGTTACTGCAGGGAAGTTCCCATCCTCCATGCTTTTGTGTTAACCAGCCTTGTGATGCCAAGTGACAGACAAGATTATTCCCATTTTGTAGATAAAGGAAACTGATGCACCTAGAGACACAGAGGATGGAGCCAGGTTTGAACTCCAGTCTGGGTCTCAGAAACTCCAACTCCATCCCTGGCTTCCTGGTGCAAAGCTCTGAAATCTTAAAGCGGAGAAGTGATGGATCAGGGTCTCATTAGGGAAAGATTGCTCCAGAGCCAAGATTGGAGCGAGCACATTGTGAAAGTCACAATGAGGTGAGAAAGACCTGAGTGGCAGGTTTGGGAGGAAGAAGAACTGTCTCTGTCAGGCTGTTCCCCGGAGACTGGGGCGTGGGCTCCCTCTACAGATTCCTGCCCTCAGGAAGGGTTGGGGGCTCTGGGAATGCAGCGACCGGGGCTGGGTCTGGATTTCATGCTGCTGTGCCTTCTGGCCGGCCACTCCCTGCAGGGTTTTCATCTTCCTCAGTGATGTGCTGAGCCTGGCTCTGTTCTCAAGGTCAACGTGAAGTGGCTCTTGCCTGGAAATGTGTCCTCCAGAAATGACTGACTCTATGTTCTCTTCTCCTGTCTCCTGTCTGATCCGTTCCTCTCCCTCTAAATGTGAATGGACAGTTCAGTTTTTAAGGCGATTATCTGGGAGAGGCACAGCCAGGCAAGATCTGCCTGATGGACTCTGCTCGTCCTCTGCACACTCCCCCTCCCATCCTGGTCCCTTCTGCTCCCTGACAGCTGGAGGAGGTTCAGTCTCTGTCCCTGTCTCTCTATGTCCTCCACGAAATTGACCTCTTAACTCTTCGAACTCATACCACTTCCAGAAGAGTGAAGCTAGATTGCGTTTCTGTGCCCTGTGCCTTGTCAAGTCCTTCTGAGGCTTAAAACACACCTCAGTGTAGAACAGGGTTTCCCTGGTGGCTTAGATGGTAAAGAATCCACCTACAGTACAAGAGACCAGAGTTTGATCTCTGGGTTGGGAAAAATCCCCTGGAGAAGGAAATGGCTACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGAAGCCTGGTGGGTTACAGTCCATAGGGTTGCAAAGAGTCAGACATGACTGAGCAACTAACACTTTCAGTGTAGAACACCAGCTTTTAAAACCTGGGGCATTTGCTGCAGTGATCGATTAATTTGAAGTTTCTACATAATCAATTAGAAATGCACCCAGTGCCTGGCCTCCTCCATTTGTTCACCTTACCTCTAGATGGAGGCTGTGTTGAGGGGGCTTGGATTAGAGAGAGAACTGGCCCAGGAGTGCTAGCATCCTACCTCTGGCCCTGGTGCCCACCCTGATTACCTCTCAGTGCCTGGAGGCCACCCCACTTTTGCCCCAGGTCAGCAGTTCATAGAGTCTGTGACCTTGCACTTGGAGTCCCTGAGACCCTTTCAGGGGTTCACAAGGTGAGAACTATTTCCATTATAGCACTCACAGGTCCTTTTGGCTGTTGGCAGTTGAATAGGATGATGCAGGAGCAGCAGTGGATAAAACAGATCAAAGCAGTGGTACCCAATGTTACTAGCCTTCATGGAATGCTTTGCTGCCAAGCTTAACAGTAACAGGAAAGGGTGCCAGTTCCAAATATGGATGCCCTTGATGAAGCAGTAAAAATGATTGGTTTTATTATATTTCAGTCTTTGAAGTACATGTGTTTTTAAGACCAAATGGGAAATAACAATGAAAGCATTTCTGCAAACCAGCCCCCAGTAGAAAAGCACTCTTGTGATTGAGCTGTGAGTGGAACGAGCCCTTTTTTGTCACGAAACACAGTTATACTTGGGACAGACGACTGATAGACAGATATACTTAATTTAGACTTGGACATTTGGCAGGTATTTTCTCAAAAAGGAAGTAAGTAAGCCTGTCACTTTTAGAAACATAACCAACGGTATTCATTGCCAGTGACAAAGCTTTCAACCATGAGCTTAGAAGCTTCCCAAACTTAAAAAGTGATGGTATCCATGGTGATATATATGATATTTGATACCTTATAATGAAATACATAGATATTTGAAAGATCTGCATGACTTAATGAGCTGATAGTTTCCAAATGACCCTTATACAGTGTTACAAACTATACGTGGGTGAGTCATTTTTTTTAAAACTTGAAATATAGTTGATATACAATTTTGTGTTAGTTTCTGGTGTACATCAGAGTGATTCAGTTATACATACATATATTCTTTTTCAGAGTCATTTCCATTATAGGTTATTACAAGGTATTGAGTATGGCTCCCTGTGCTATGCAGTAGGTCCTTATTGGTTATCTATTTTATATACAGTACTGTCTGTCTGTTAATCTCAAACTCCTAAAGTGTCCCTTCCCTACTCATTTTCCCTTTGGTAACCATAAGCTTGTTTTCCATATCTGTGAGTCTGTTTGTGTTTTATAAATAAGTTCATTTGTCACCATTTTTTGAGATTCCGCATAAAAATATCATAGATTTGTCTTTTTCTGTCTGACTTTCTTCACCTGGTATGATCTCTCAGTCCATCCATGTTGCTGCAAATGGCATTTTTCAGTCTTTTTTATGGCTGAGTAGCGTTCCATTGTATAGATGTACCGCATCTTCTTCTGTTCATCTGTTGGTGGGCACTCAGGTTGCTTCCATGTCTTGGCTGTTGTAAATAGTGCTTCTGTGAACACTGGGGTGCGTGTGTTTCAAATTAGAGTTTTCTCTGACATATGCCCAGGAGTGAGATTGCTGGGTCATATGGTAGCTCTGGCTTTAGTTTTTTAAGGAACTTCCATACTGTTTTGAAACTGGAGAAAACCCATAGAAATTCCCTATAGCTGATTAACTGTGGTTTCAGCACTGTTTCTAGGAAACACATGAGACTCCACAGAGCAGTCTAGATACACACACACATCTTGACATTTCCTGCACACGTAAAGCATGTCCTTAAAGACTGAATGCATACCAAGCATCTAAATATAACTTAGATGCTGTAGGACCACTTGTAATGGATTGATACGGTTTCATGTTTATTTGCCCCCAGCCAGGATCTCATTCTAAATAAACAGTATACCGAACAATGTGTGTGGAGAGGGGGGAGGAGTGTCTGAACTTTACTGGGGTCCAGTTTCAGGTATTGAAAGATTTGCTTTAAGATATTTTCCTAGATAATGCTGATTTTTATGCAGAGGCAAAAAAAGAGTCATTTTGTCACATGTGTCCCTCAG
Seq C2 exon
ATTCCCATGATGCGGTTTTGAGGTTTAACTCTGCTCCTACACGTGGCTACGAGAAAGATGTCGGAAATAAAACCACCGTCCGCATCATTAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000703:ENSBTAT00000000937:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(26.7=24.4)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development