GgaINT0106730 @ galGal4
Intron Retention
Gene
ENSGALG00000016803 | ST6GAL2
Description
beta-galactoside alpha-2,6-sialyltransferase 2 [Source:RefSeq peptide;Acc:NP_001161219]
Coordinates
chr1:135024353-135029750:-
Coord C1 exon
chr1:135028805-135029750
Coord A exon
chr1:135024451-135028804
Coord C2 exon
chr1:135024353-135024450
Length
4354 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CCCATTATTTATGCTCCCAGATT
3' ss Score
6.61
Exon sequences
Seq C1 exon
ATGAAACCTAACTTGAAGCAATGGAAACAACTCATGCTGTTTGGAATCTTTGCATGGGGTCTGCTTTTTCTAGTGATCTTCATCTATTTCACAGACAGCAACAGTGCTGAGCCAGTTCCCAGTTCCTTTTCTTACATTGAAACGAAGAGGCTCCTGCCCCTGCAGGGCAAGCAGAGAGTCATCATGGGAGCCATACACGATCCGTCATTCTCTGAAGCCATTGATGGGAATGAGGTACTCCTTAATGAAGATCTTTTAGATACATTTAAATCAGAGACTGGAAGTATTAAGAAATGGACTGATTTGGAAGATGCCTTTAGAAGCGAAGATGAGTTTTTTCCATCCCAGATAGGACGAAAGTCAAAAAGTGCTTTCTACCAAGTGAACGATGATTATTTATTCGCTGCTGGTCAGCCTATGTCACACAACAGCTTCCAAGAGATAGCAAAATTCATCTCAGCCGATGAGGATAATCCAAAAGAAAGTATTTTACAGAACAACTGGAGCCGTCAGAGGAGAATGAGGAGAAGGAGCACAAAGCACAGAAGAAGCCAGATGCTTGATGAATCTGATGACTGGGATGGGCTGTATTCTACAATGTCGAAATCCTTTCTATACAAGCTCTGGAAAGGAGATGTCTCTTCCAAGATGCTGAACCCTCGACTGCAGAAGGCGATGAAAGATTATTTGAGCACCAATAAGCATGGGGTGCGGTTCAAAGGGAAACGAAACTCGAAGCTGACAGGCGACCAGCTTTTCTGCGAGCTGAAAGAAAGGGTGGATGTGAAAACAATAGATGGCAAGGAAGCTCCCTTCTCCACTCTTGGATGGGAGAAGCACGTTCCTCAAATTCCACTGGGCAAATTGTATACACATGGCTTTGGGAGCTGTGCCGTAGTTATGTCTGCTGGTGCGATACTGAACTCCTCTCTAGGGGATGAAATAG
Seq A exon
GTGGGTGAAATGCATCTGTTCATGTGCATAAGTATGTACACACGCGTATTCACGTTTGTCTTTCAAAAGATTTATACTTCTCAAGCATTGTCCTCTAAAGGATCTGGTTAATCTCTCTTACCAGCATTATGTGAGTGTGAGCATACAGATTGCAGCGAACCTGTTCCCTTTCAGAACAGTATAATTGAAAGGAAAATCCAGCCTGAAGTCCTAATTTGATTTAATGAAAACAGTGATGCCTTCTTGTAGTACTACAGCTTGTAGTATAAAGGAGGCACCGGTTTCATCAGTTTTGCCGTATTTGACATTTTGCTGCAAACTGTGTTCATTTCTTCAGCAGATGAGAGCCACTTTCAGGTTTCATTCCGAAAAGCTGTTATACCTGTCCATATTTCGGTGTGACTCATCAGGAAACTGCTTGTGGCTTTACTGTTCCAGGCTAAACTTTGTCTCCGTGCCAAGAAGCAATTGAGCATAATCTTAATCTCCTGCATGTTTACAGCTCACAGGCAAATAGAATTCAGGCCCTTCAATAAATTCATGCTCCGAGATCAAGTCTGCTGACCTCTTTTCTAAGTGTGAATTTAAATGAGTTCAAGTATCTCTTCCGATTGTTTCTCCATTGCTGCACTGAGTCATTGAGATGTCAACATTATACAATTCCCTGCTTAAAGCTGAGGGTTTTGTGTTGGCTATTCAAAAAAGAATTGTGGAGCCATAAAACTAACCCGGGTCAGTTTTCGTTTTGCCTTTTTTTTGTTGTTGGCTTCCCCTTCCCCCCCCCCCCCCCCAGATTTAGTGTTACAAGTTGTATTAACATCTCAGTAGTTCATTTTAGTGCTACATGTACAGTATGCTAAGAGCATTGAAAGAAGGATGAAATGGGTGTCTCAGGCTTGCTTCTAGAGCAGGAAGAATTATCTCCTTTAGCACTACAGAAACCTTTTGATGTGCAGTCTAACCCTCCCATCTTCCACAACTTCACATTCCAATACCTGCTTCATCGCTCTGTATCATGTCTTTGACACAGACGGGTTTCCTTTACATCTTTGGGATATTTTAGAGCTGCTATCATTATCAGACTACTCTAATAGGCTTCCAGCACAACCCAGGTGCCCTGATGTCCTACAGCAAAAGTCAAAAGTCAAACTAGGATAACCCATAATTTCACAGGAAGGCTCCACTGATTTAGAAATCTCTGGTATGAGGCAGCTTTGCAGGTTGACCATTCTCCAGTGTATTACTGTAGAGTGAAACAAGATTTCCTTTTATCAGTGTTTCCCACTGCATCCAGTTTATGCAAGTACAAATGAGTGATGTACTGGAAAATCCATAGCACACTGTGGTTTGCATTAGGGCAGAATGCGTTGTGGTGTGCATGTGCTTGGGTGCAGCCCAGGTGTGGGATTTGGGATCCTCTTGCTCCTGCGTTTCCATTCCATCATAAAAACTCACGGCACAGAAAGCTTACGCTGTTCACTGCAAAAGAACTTCTGGTTTAACTGGAAATGATTGTGATGCTGCCTAAAAGGAGGAGATGCTGCTTTGTAAGACCTACGCTAACGTTTTACATCTCCTGCCTGCCTGCTTGTCAGGAAAGTGTGTGGGGCAACAAGATTCACAAGATTTCAAAAAAAGATTTTTGTAAGTGTTGTGCAGGCTGTGAGCAGGTATGATTGACTGAGCAGAGAATTCAGCTCTGAACTGCAGGGCCTGACCTTAGACACACAGGTCCTTGTGGTCACTGTGACTCCTTGGAAGTGTCCTCATTGTCCACAGAGGCATGGTAAAGTCTCTGTCATTGGAGAGTGGGGAAAAACACCCCATGTGTGAATTCTGGTTTGGGGACTATGCGTTGTATTGCCTTGTTTGATGGAGTTGCTTTATCGAAAGGCTCTTACTGTCTACCCTCCTGAAAGAAAAATAGGTGTAAGAAAGGAGCAGCGCAGGATCATTCGCTCCATAGGCCTTTAGCTCCCTCTTCTGTGATCCTATTAGAAATGCAGACAAAAATATTAATGTTTTTTTTTGTATCCCTTACCCCATATTTCTTTCCTAATGAAACTAAGCGTGGAAATACATGCAATACCACAAATGCTCCCAACGTGATCGTGCTACTAAATGGGATACCCAATTATTTTGGCAAAATGAGAAAGTAATGGGGATCTATGATCTAACCTCAAACGTTTTGCAACTTTGAAAGAGTTATTTTTGACCACTTACTAAGATTAAAATCACTTAATTTAAAATCAATTATTATCAGTGTTTGGCAATTATTATCAGTGTATCCTAATCAAATACTTTCCGATGAAGGAAATGTTTTTTTTCATCTTGGTATGAAAAAAACAGAGTGAACAATCTTGGAAATGCAGTACACTGTGTCTGAGTTAAGTTGTGAACCATAGAGTTCCCATTTCCTAAACCAATTCCCAGCTCTCACTCAAAAGATAGTCAAAAGTTGTCTGAATTTATTTTATATTTTAAATTCATAAGCAGATTTCGGTTATAAAGGGCTTTTGTTTTTCTTTTCCATCTCCAGAAATGTGGAGTACTTGCCACTTTGATTGACTCAGTGTCTTCTAGCTTCTCCACAATCAAGATAATTATGTTTAGGCAGATGAAGGTTAGGTGTTGGTGTGTGTGGGGCACCTGCACAGTGACATGGAAGAAGTTTCCACTCCTTAGTAGCTCCTGAGACCCTGGGCTTAGTGGATGCTCTGCAAAATCTCTCAAATACAATACATTCAAACAAGAAAATATGGCAGGGAATGGACTGCTGATTTCATGTCATACAGTATTTTCTTGTCTGGAGTACAAGAAGTGTTGAGTGAAGTTGGAAAAGGATCGAAGACAGGAGTTGATTAGTGTCAGACCCAAATTTCCTAAAAACGTTAGTTATATTTGGAAACTTCTGCCTACTCCAGTTTTGAGCTACAGGTGACCACATTTGAAGTGACTAGAGATAAAGAACTCTGCAAGCAATCTGTGCGTATCCATTCTGGCCTGAATCATATTCCCTGCTTTAGTTGGTAGAAGGGATAAAAGTGAACAAGATAAGGGGAATATTGACAAAGGCGATGTGTTTCAGGAAAATGGGCATCATCTCACTCCTTTTGGGTTTTGATATCTCCTTAAAAAAATACACTGGATGGATAATAATCTTTTATCCAGCAGAGCATGGCACACAGTATCTACCCTTGACCCATACTTAATGTGTAGCTGCTTTCTGTTCTGCATGGCTCTGACGTCAATAGCTTGTGGGAAGTCTTTCACGGTTAACTCCATTAGGCCTTTGCTACCAAGGATTCTTAGGTTTCTGTGTGTGAGAAGATTTGTGGATTGAATTCCCTGGTTAGACTCTTTAAGACCTGTACCAACCTCGAGAATGAGTACATTTGATTAATAGGTTTGGGGTGGTCTGAAGATTTTTCAGGTGTTATGAAATACTGTGAAACAAAAGCATATTGTTGAGCACTGTTATTTATTTCAATATGCAGTTAGATACCCTTTCAATTAACATACTTTTGCATGGAGTAATTATTTGTAAGGTTTTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTTGCATAGAGTAATTATTTGCACCTCTCCTATGAAGAAAGGTTGAGAGACCTGGGCTTGTTTAGCTTTGAGAAGAGAAGGCTCCGGGGAGACCTCATTGCAGTCTTCCGATACTTGATGGGAGCATATAAACAGGAGGGGCAACAGCTGTTTGCAAGGGTGGATAGTGATTAGGACAAGGGGGAATGGTTTTAAACTGAGACAGGGGAGGTTTAGGTTGGATATTAGGAAGAAGTTTTTCACCCAGAGGGTGGTGACGCGCTGGAACAGGTTGCCCAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGCGACCCTGCACATAGCAGGGGGGTTGAAACTAGATGGTCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATAGATTGATTGTAAATTTTACAATAGAGATAGCAAGTGACTGTGTGTACTGGATGAACTGCTAACCTTTCCATGTGAATTTTGTCAAATAGAAATGTTTAAGTATTAAAAGCTAAATTTACAAGTGATGGTATTTTTTTTCCAATGGATGTCAATACTGTATGTCAGATGCAAGAGGATTTTTGTTTGCTTGTAGCAGAATGTTTATTATACTTAGAATACCAAGATCAGGAGAAATGTGCAAGTTTTAAATTTGTTGAGATCGTTTGTTTTATTTTAATGTTCAGTCTCATGAAGAAAAATAAAAATGACCCCATTATTTATGCTCCCAG
Seq C2 exon
ATTCTCATGATGCTGTTCTAAGATTTAATTCTGCTCCAACACGCGGCTATGAAAAAGATGTTGGAAATAAAACAACGATGCGAATCATTAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016803:ENSGALT00000036571:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(28.4=22.7)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]