HsaINT0159840 @ hg19
Intron Retention
Gene
ENSG00000144057 | ST6GAL2
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 [Source:HGNC Symbol;Acc:10861]
Coordinates
chr2:107450505-107460490:-
Coord C1 exon
chr2:107459491-107460490
Coord A exon
chr2:107450603-107459490
Coord C2 exon
chr2:107450505-107450602
Length
8888 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
TGTCACTTATGTGCCCTTAGATT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GTTCATTCTGCCACCCATCTGCATTAAGACACAAGGTGCTGACCGCAGAGACCTGCCATGAAACCACACTTGAAGCAATGGAGACAACGAATGCTTTTCGGAATATTCGCTTGGGGGCTCCTCTTTTTGCTGATTTTCATCTACTTCACCGACAGCAACCCCGCTGAGCCTGTACCCAGCTCCCTCTCCTTCCTGGAGACCAGGAGGCTCCTGCCGGTGCAGGGGAAGCAGCGGGCCATCATGGGCGCCGCACATGAGCCCTCCCCGCCTGGGGGCCTGGACGCACGCCAGGCGCTGCCCCGCGCCCACCCAGCCGGTTCCTTTCATGCGGGGCCTGGAGACCTGCAGAAATGGGCCCAGTCCCAAGATGGGTTTGAACATAAAGAGTTTTTTTCATCCCAGGTGGGGAGAAAATCTCAAAGTGCTTTCTACCCGGAGGATGACGACTACTTTTTTGCTGCTGGTCAGCCAGGGTGGCACAGCCACACTCAGGGGACATTGGGATTCCCTTCCCCCGGGGAGCCAGGCCCACGGGAGGGGGCTTTTCCGGCTGCACAGGTCCAGAGGAGGCGGGTGAAGAAGAGGCACCGGAGGCAGAGAAGGAGCCACGTGTTGGAGGAGGGCGACGACGGCGACAGGCTGTACTCCTCCATGTCCAGGGCCTTCCTGTACCGGCTCTGGAAGGGGAACGTCTCTTCCAAAATGCTGAACCCGCGCCTGCAGAAGGCGATGAAGGATTACCTGACCGCCAACAAGCACGGGGTGCGCTTCCGCGGGAAGCGGGAGGCCGGGCTGAGCAGGGCACAGCTGCTGTGCCAGCTGCGGAGCCGCGCGCGCGTGCGGACGCTGGACGGCACCGAGGCGCCCTTTTCTGCGCTGGGCTGGCGGCGCCTGGTGCCCGCCGTGCCCCTGAGCCAGCTGCACCCCCGCGGCCTGCGCAGCTGCGCTGTCGTCATGTCTGCAGGCGCAATCCTCAACTCTTCCTTGGGCGAGGAAATAG
Seq A exon
GTAGGTCTCAGCGGGGGGACCAGGTCGCCCTGTCTTGAGCCAGTGTGTCCCTGGGGGCCGGTTCTTTCTGAGCGCGCCTCTGGATCTCTGACGGGGCAAGCTGGGGTCTCCGCACCAGGTGTTCCTAATATTAGCTGGAGATTCTTCAGGTGCTTTCCCATTGCTGGCACAGAATGAGTCTGCCTGGGGTCACAGCAGAAGTACTCTTCGGGAGACTCTTAGAGCAGGGATTTGGGGAATGCTAGGGAGCAGGAAGGGTCCTCCCCATAGCTGATGCCAGTAGGCAGTGGAAGGAAAGCGCCGCCCTTTGCCCCCGGCGTCCTTCTCACTGTTCAGACTTCGTATCCCATAGAAACCGCAGTCTGCATGGATATGCCCCCAGGCTGTGGCCCCTGAAAGCCCGGTGAACCCATCCTGCAGTGGGAATATGGGAAGGGAACAAGAGGAGGAGGCAAGAAAGCAGAAGCTGCCCAATCAGGGCGTCAGCTCCAAAGAGCAGGGTGCATGAAGATAATATTGGTTACTGTGAGCTCTGAGAAGAGCCCAGCTGCTGTTGGGAACATCTTTCCCATGGGAGAATAAGTTCCGGCCTCCCAACTGTTGGCGCAAATCCAACCTTTGGGGCACTGCCAGTGCACCTACCAGGGACCTTCTCCAAGATGGTAAATAACATGCAACACCTGGGCTTCCTCCCTCCCTGCCAGGCTCTGCCTTCACATCCCTGTCAAGAGCCCTGGAGCACATGTTTCCCAGCTCCTGTATCAGTCAGGGTTCTCCAGAGACTCACACCAGGAGGATATGTGTCTATACAGAGACAGATTTATTTTAAGGACTTGACTCTCATGATCGTGAAGGCTGGCAAGTCTGAAATAGGTAGTGCAGCCCAGCAGATGGGAAACTCAGGCAGAGTTTCTGTGTTGCTGTCTTGAGGCAGAATTGTTTCTTTTTTAGGAAACTTCAGTCTTTGTTCTTAAAGCATTCACCTGGCTTGAGGAAGCGCACCTGCATTTTGAGAGTCGTCTGCTTTTCTCAAAGTCTAGTGATTTAACTGTTAATCACATCTTAAAAACACCTTCCCAGCAACATCTGGACTAGTGTTTGACCAACCAGCTGGGCACTGTGGCCTAGCCAAGATGGCACACAACATTAGCCATCACTATTTCTTCCTAGTTTTCAAGTAAAATACCAATTCTAATCTTTTTTGATTGATGGGGCCATGGCAGGGTTCAAATACGTTTCCCTCCTGCAGAGTGGTGTAGGTTCTGCACCAGATGGGCCTGCATTGGCTCTCCTCAGAATTCCCCTTCCTCGCTGGATCACATTCATTTCCCCACCTGCCCCAGACTCTCACCCTGTCTTGCCAGAGATACCCAGGCTCTTGTGTTGCCATAGCTGGGCTCTCCCTCAGCAGTTTCAGATCCCTTTGCTCCCGGAACCCCCCTTCTTCCCAGGCTAATTCCACTGCTAGACCAGTCAGCAAGCAGCTTGGCCCTTTAGGCTCATTCATTTGACAAATATGTGTTTAGCCCCTAATATGTGCTTGATTCTGTACGAGGAGCAGTAAAACAAATGTGAGTCAAATACAGCGTCAGCCTCAAGTCCAGATATAAAACAATCATGTCCTGTACACTCTCACAGTAGGCGTTGTTAGGGCATAACTGGTCTGGAAGTGACATTCCGGGAGTGTTGCTCCCTCTTTGCAAATAAGTAATCTTTGTTGTCTTCATTTTAAGCGGATCCATTAGTTGTTCTGTGTCCTTGAAGAGTGGCCTATGTTCCAGAGTTCTCTCGGAATAGGGTGAAGCCACTGTAGGCAGGCTCAGAAGCCCAGATCTCAGCTCAGCAGAAGTCCTTGGGCATGAGGCTGAATGAGAAATATTTTTAAAGTTAAAAAAAACAAGACAGTGAGTCTGGAATCAAGGTCTGGGGTACCTGTGTCCCTGTGCTGACATTACAGCAGGCTCATAATAACACAGTCCATGTGTCATATAAGCTTGTAGCCAAAGCCAGAGCAGAGCAGCCTGCAATTTATTAAGAAGAAGCAGTGGTTTAGAGGTCCCCGGGGTGAAATAACACCACAGTTCTTTCTCATTTCTGAGAGCCAATATTAATAATGTGGAGAAGGAATTTAAGTATTATGCTTGAAGCAGGCAGTAACTTGCTTCCGGTTTGGTTTTGTTTTAAACACCTCTGCATCAGAGGTGAAGATCTGGATTGCTCTTGCATGTCAGTGGGCAGTCCCTCGTTCTTTTTTTCTGCATAAATATCCCTGACCAGAATCTTGTAAACTCTGTTTACAATTTGGAAGAGAACGTGAAAGACGCTGAGAAGTCCATGTTTCTGGGAAACTTGAAATGCCAGTTATATCTTTGTTAATTTCTAGTATCCAAATCTAATTTATTTGGCATGCACTTGCATGAGCCTTTATGATTAGAACTGTAGAATCACAACTGAAGAACATGCCTGGAAATTTCTTTAAAATTCTCTTTATTGTTTTGTCTAGGGTTGTTTGGATCAGATTTTGTATCTACTATTTTAAGAACATGTAACCATAGCATGGCTCAATTTGTATAAACAAAAAGTTTCATTTGTATAAGTTGGTATCTCAGCATCAGCAGTGTACATGCCAGGTGCCGACCTCGCTCCTTCCTGTTCACCTGAATATATGCAAGCAAACCCACATAGTTATGAATGGCTTGCAGAATACAAACAAACTCTGGCAGCAAATTCCTTCAGGCAGCTTAGAATATTGGGGGCATGGTGTAGCGAAATTCTTGTTGGCCGCTAAGCATCTACTTGTGAATTGGCTAAATGAAGATCAAAAGACTTACCAAAGATCACGATCTTATGAAAAATTGAAGGCAGAGCTAGGAAGTGTCTCAGATGATCACTGCTTATCAGCCCTACCTATGTTCTGCCAGGAGGAGCCCTCTCCATGCTGACGTCAAAGGGAGACCCAGTCAGTCTCAGGTTTGCTTACTGGCTGCCCTTTCGCTCCCCCTGGTGTTTGCTCCACTGGCAGTGCAGCCCCCATCCCCCTACCCTTCTGTTGGAACTGGGTCACACAATGGAATTGGTTTTGGTTAGAAAAGTAGAGCAGTTGTAAACACTTCCACTGTGAATGTGTTATTGAAAAACAAACTAATTGTTTTGGAAACCTGGATCATTCTTTCCTAGAGTTATAAGATGATCTGTTTTCATCCATGCATATAAGCAATAATAATTTGCTTCTATGCAGTGCTACTAGCATTCATGTGGAAACATGTTACAGAGCAGAAAGGTCTGCTCTGAACCACCAGTAATAGCCTTCATGTGGGAAACCAAGATCTGTGTACCTGAAACTCGAATTCTGGCAAGTGCATGGGAAATGGGACATGGAGGGAGAGACTGGGGGTGGGATGCATAGACTGGTGGAGAGGGCTTGAGATTTGACATGTCCTGTTACCTTTTAAAAAAGCAAGAAAGAAGAAAGCAGTCCATATACTCATCCAATTAGCATTATTTATTGATCACCAACTCTCCACCAGATCCTAGGCTAGACACAAAAATGAATAGGTCACAGGCTCAACTATCCATACCGGCACACTTCAGTGGTAAACAGACAATTCCAGTGTTGTGGGTTGGAGAAGGACAGAGAGATATGTAGGCTGACAAGGCAGAAATGACAACGGATTCCTAACTCCCCTGAGGGCTGGTAGAGAGAAGAGATTGGTAAAGACTGCTCCAGGGAGAGGAGACCAAGCTGAAGGCCCAGCATCATATGGAAGTGAGAAACAGCATGTTGTGCAGGTGGTGAGAGCTACAGGGAGTACATGGGCTCGTAGGGACAGAAGAGAGAAGCAGGCTTGGAAGGCAGATCATCTTCCTGGATGCCCTTGCAAGCCACTCTATGAATATTAGACTTCACTTAATTGAAATCAGGTACCACTTATATAGTACAGACAAGGCCCTGTTCAAAATGCTCTTGTTTTTTTTGTTTGTTTGTTTTTTTGCTTTTTTGAGATGGAGTCTCCCGCTGTTGCACAGGCTGGAGTGTAGTGGCACAATCTTGGCTCACTGCAACCTCCACTTCCCAGGCTCAAGCTATTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCGCCACCATACCCGGCTAATTTTTGTGTTTTTAGTAGAGATGGGGTTTCATGATGTTGGCCAGGCTGGTCTTGAACTTCTGACCTCAAGTGATCTGCTCGCCTCGGCCTCACAAAGTGCTGGAAGTACAGGTGTGAGCCACTGTGCCCAACCCAAAGTGCTTTTTATGTGCTAACTGTTGTAAACCTTACAACCCTAAGTGATAGATAACTTTGTTCCCATTTTACAGATAAGGAAATGAAGGTACCTCCAGTCACATGTGCAGAGTCTGGATTCAAACCCCAGTCTGGGTCTCCAGAAACACTAGCTCTCAGCCCTGTGCCCATGATGTGCAGCCATTGCAGATAGTCACTGTAGAGAGATCACTCCAGAGCCTGGACTTGAGGGTGCAAGGGAAGTACATCAAGAGGTGAGGGTTACAGGTCCTGGGGAGAAACAGGGCTCCCAGGGTGATGGAGCTCCCAAAGCGATGCTTTGTCCAATCCCAGGCAGGCCATTCTCTAGTGACTGGAGGCTTGCTCTCCTGCTGTTTGAATTTTCTCATCAGTGTAGGAGAGGGGGATGATGTGGTGAATGGGGCCTGGGGCAGGGCGGTGACCGGGTGCTGGCCCAGCAGCTCCTTGAAGGGCTTTAATTTTCCTTCCATGGATGCACTTGTCTGGCTCCATTCTCAAGGACAACACAGCATGGTTCTGGCCTGGAAATGCCTTCTCCAGAAATGGAACTTGACTTTCTTCCCCTTGTATTTGCTGTCTGACCTATTCCTTTTTTTCTAAATATGAATGGACAGCTTCTATTCTCACAGTGCATTATCAAGGAATGCACAGCCAGGTGTACGTTTACAGAACGTGTCTGTGTGAGAGACAGTCTCAGCGCACCCTCCCCTTCCATCCCAACCCCACGCTGCTCACAGTGGCTGTTCATAGAGGGCTTGCACTGGGCCTAGCCACAAGCCTACATGACCCTGCCTCCCTGCCCTCTCCATGCAGGTGGCCTTTTAACTCTGCAGACTAATACCACCTCCAAAGGAATTACACTGCGTTATCTTTCTGTGCCCTGTGCCTCGTGAAGTCCTTGGATGGTTTAGAGCACAGCTCCACAATAAGACAATGGGCATTTAAATGCTGGGATGTTTTCAAGGGTGATGCAATTAATTCAGATTTATTAGTCAAATAATAGAAATGCACCCACCGCTTGAGGCCCTTGGGTAGGCTGTGTCTGAGGGGTGGGTAGCGTGGTTTGGAGAGAACTGAGATTGAGGATTGCTGGCATCACACTTCCTCTCTGGCTTAGGGCTGATTCCCTCCCAGCACCTGCAGTCACCTCGCTGGTGGAGTCTCCTCTCACTGTCTGCAACCAGAGGGTTTCCCTAGCTTAGCAGTGGGAACAGTGAGATCTAAGCTTACCCTTAGCCTTTGCAAGACCCTTTCGAGGGTCCATGAGAAAAAACTATTCTGGTAAGTATACTCAGAGTTCTTTTCCTTTCAGTTGTTGACATTTGCACTGGTGGTACAAACACAATGAATGATGCATGAGACAGGGGCTTCTTAGCACAAGTCAGGGCAGCAGAACCCAAAGCTCAACCTTTGAATACACGTGTTTTTCAGATTCAGTGGGGCACATGGGGAAATAGGAGAAAAGCACTTATGTGTGCCAGTTCACAAAGGAAAAGCCCTTGGGTAATTGCACTGTGAGCCGAACTAGCCACTTTTTTCATGAAATACAATTTTAACTTGAAAAGAAACGTTAATTATTCAGACTTGGATATTTGGCAGATATATTCTCAAAAAGGAATCAAGCGAGCCTGTCACTTTTAGGAAAATAACTGATAGTATTTGTTGCCAATGATAAAATTCAAGCTTTGAACCATGAACTTGGAAGTTTTCCAGACTTTAAAAACTGGGGAACTCCATGGTGATACTAATCAATGTGGTGTTTCAATTCTTTTTTTTTTTTTTTTTTGAGATGGAATTTTGCTCCTGTTGCTCAGGTTGTAGTGTAATGGTGCAATCTTGGCTCACTGCAACCTCTGCCCCCTGGGTTCAAGCAATTCTACCTTAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACGCCCAGCTAATTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGGTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGATGATCCGCCCACCTGTTCCTCCCAAAGTGTTGGGATTACAGGCCTGAGCCACCATGCCCAGCCAGTGTTTCAACTCTTTATAACAAAATGCATCACTATTTGGAATGTCTGACTAACATATTATATATATATATAACTTATGTATAACTATGCCTAGCTGATAGTTTTCAGCTGATCATTGTACAATATTATACAATTATGCGTGAGTGAAAGATCCATTTTAAGAGAAAAATAGACCACAAGTTTTAATGTAACAGAGCACAAAAAGTTCATTGATAGGTTTCAGATTCCAAATTGTAACCAACCCTAAGAAACTAGCCCTCGTAGAGTCTTGTTAGGTATCAAAGAAGAATATTCACAGTTCTTTGGAAGGATTCTTTAAATAGCTCTCTCAATTCAACAGTGTGTCTGAGCCTTCATATACTTCAAATAAAACAACATATTGCAACAAGTTGAATTCAAAAGCAGATGTGAGAAACCAACTTTCTAAAAAACCAGACCTTAAAGAGACTTGCAGACATTAAAAACGGTGCCAGTCTTCTCAGTATTCTTTTGGTTTTTGAAAATATAGAGGTTTTTTAAATTGAAAAAAAGCTGTTTTAAAATAAATTAATAGACATTTTAAAATTCCGTTTTACCTTTTAGTATGGTAAATATCAGTAGATATATTCCATCTGCCTAAAAAGTGTTTGGATTATCAATAAATTTCAAGAGTCTACTGTTTTGGGTAATCTAGTTTTTCTACCTCAAATATTATTTGAATTTTTTGACAAAACATTATTCAATAAAAATAAATAAGAAATCCATTACCTCAATAAAGTATGAACAAATCCTTAAATTGTGAAGTAAAGAACTGGTTTTAACTTGGAGGCATTCATGTATTTTGGCATCATTTACACAAAGAATAGATCCCCTTGAACCTAGAGATTGGCAGACTTTTTTACAGAGCCTGGTAGTAGATATTTTTTGTTTTGTGAACTGTATCTCTGTCTCTGTCTCAACAACTCAACTCTGCAGTTATAGACAGCATGTACAGTGAGTGTGTCTGTGTTATGGTGGAACTTGATTTACTAAAACAAGTGGCAGGTCAGATTTGGCCAGAAGGTCATAGTTTGCCAACTCCTGCAAAATTTCCCCTAAAAGAACATTGCAGGGTTTTGATGACACAGCCACCTACGCTTTATGCATTCACATGTTCCAAAAGTGAATTAATTTTGGTGCTAAAGCTGGAATTTGAATTTTTTTAAGTTTAGGGTTTGTCAGTGAAGGCACCTTTTTAAACATTGTTTTAGTGGGGGCATGCATGGTGAGTTTCTGCTATTTGGGGAGCAAGAAGACAACTCCAAAGGAGCAGATAGCAGGAACTCAGGGAAGAAGGCGGCTGCCTTAGGCACTTGTGCGGGCTCGGGGACTATAAATGCAGCTCCCCTTGGGCATGACAGAAATACTTCTTTTCACCTCTCCCTCACAGACAGGCACTGTCCTTGCTCCAGGCCGAGCTTGGAATCTGCATGAGATATTTAAAGCTAAAGATGGCCCTTAGAAAATTGCTTTCTTGCTCACTGACTCTGGCTTCAGGCTGGTTTCTAGGAATTTCAAGACGCATGTATGTTTATAGGCTGCCTTCTGTAAAGGGAACATATCCCCTAGTCCCAATGCTAAATCAGGTGAACCCACTTTCCTGTGCCTCCCACTGTTCACCTCCTTGTCAGCCTCCAGGATAGGGGTACCTTGTTTTCATCCAGGACCTTCCAGCCCAGCATTCAGAGAACTTGGGCAAGTCGGGCTGTCAAGTTGAACGAAGTGAGATGTAGATTTACGTTGCATTCATAGTTCAAGTTTGGTGAAGCACGGTGTGTGGTTATAGAACATAAGAGCCCTGGCAGCTGGTGGCATTGGTGGTCTCTCCATCTCACCCATCCTCAGGGGCTATGGTGGTCTGGCAGGCTATTGCTGCTAATGCAGAATGCTCTTAAGGTTGCTCTCACACAGGTCTTCTTGCCATCGGCAGCAGTATGTAAGGCTGCGTCGAAGTCAGGGCTGACTTTCTTTCTTTCTTCAACATTACATGCAGAATCTCTGCTTAAGGACTGGCTTTCTTTTTAAGCATACACCAGCACCAAAAAGCAGCCCTTGCAGGGCTGGCTTTCTTTTTAAGCATACACCAGCACCAAAAAGCAGCCCTTGCTTTCTAGTGTCTTTATCTGCTCCAGTACAGTCTCCCTCAAGATGTATTGGAAGCTTTGGGAGAATGGCTGCATCAAGCATGTCACTTGTAAGAATGTTGAAAAGGTAGCAAGTATCTAAATATCACTTAGATCATACAGTCTCGCCCATAATTGAACAGATTTTACATCTATATATATCCATATTGATGTTTCCTCCAGCCAAGATCTCATTCTCAGTGAAGAGTAAATTCTCTGAAAATCATGTGGGCATATCTTAACTTTATTGGTGATGTATAATTAGCTTCAGGTATTGAAAGATTTGCTTTAACATTTTTTCCTAGATTATGTGATTCTACAGAGAACAAAAGTAAGCTTGTCACTTATGTGCCCTTAG
Seq C2 exon
ATTCTCATGATGCGGTTTTGAGATTTAACTCTGCTCCTACACGTGGTTATGAGAAAGATGTTGGGAATAAAACCACCATACGCATCATTAATTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144057-ST6GAL2:NM_001142351:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.0=22.5)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)