MmuINT0153223 @ mm9
Intron Retention
Gene
ENSMUSG00000024172 | St6gal2
Description
beta galactoside alpha 2,6 sialyltransferase 2 [Source:MGI Symbol;Acc:MGI:2445190]
Coordinates
chr17:55621203-55630338:+
Coord C1 exon
chr17:55621203-55622192
Coord A exon
chr17:55622193-55630240
Coord C2 exon
chr17:55630241-55630338
Length
8048 bp
Sequences
Splice sites
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
3' ss Seq
TGTCACTTATGTGCCCTTAGATT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GTTTTGTCCACCTCGTAGTGCTTTAGAACCCCAAGGTGAAGTGCTGGCCCCAAAGATCTGCAATGAAACCACACTTGAAGCAATGGCGACAACGAATGCTCTTTGGAATATTTGTTTGGGGGCTCCTCTTTTTGGCAATTTTCATCTACTTCACCAACAGCAATCCTGCGGCACCTATGCCCAGCTCCTTTTCCTTCCTGGAGAGACGTGGGCTCCTGCCTCTACAGGGCAAGCAGCGGGTCATCATGGGCGCTTTGCAGGAACCCTCTTTGCCCAGAAGTTTGGATGCAAGCAAAGTGCTGCTGGACAGCCACCCTGAGAACCCTTTCCACCCTTGGCCTGGGGACCCACAGAAATGGGATCAGGCCCCAAATGGCTTTGACAATGGGGATGAGTTTTTTACATCCCAGGTTGGGAGGAAATCACAAAGCGCTTTCTATCCCGAGGAAGATAGCTATTTTTTTGTTGCGGATCAGCCTGAGTTGTACCACCACAGGCAGGGTGCACTGGAGCTGCCATCTCCAGGGGAGACATCATGGCGATCAGGACCTGTTCAGCCCAAGCAGAAGCTGCTCCACCCAAGGCGAGGCAGCTTGCCTGAGGAAGCCTATGACAGCGACATGCTGTCAGCCTCCATGTCGAGAGCCTTCCTGTACCGGCTCTGGAAGGGGGCCGTGTCCTCTAAGATGTTGAACCCGCGCCTGCAGAAGGCCATGCGTTACTACATGTCCTTCAACAAGCATGGTGTGCGCTTCCGCAGGCGGGGTCGGCGTGAAGCTACACGTACAGGGCCGGAGCTGCTGTGTGAGATGCGCAGACGTGTGCGTGTGCGCACGTTGGACGGCAGAGAGGCGCCCTTCTCGGGGCTGGGCTGGCGGCCTCTGGTACCAGGTGTACCTCTGAGCCAGTTGCACCCGCGCGGTCTGAGCAGCTGCGCAGTTGTCATGTCTGCCGGTGCCATCCTGAACTCCTCCTTGGGGGAGGAAATCG
Seq A exon
GTGGGTCCCGTGGGGCAGTGTTTTCTGAGCTCTCTGAACTCCTAGTTCCAGTCTGGGGCTGTGCCAAAGATGCTAGACAAGCTTCATCCATCTTAGGAACCGTAGTCATCATGAGCAGAATCAACCAGGGTCAGGGGCAACAAAAGAATATGGGGAAAGAAGCTAAGGTCAAATATACTGTAGGTTGCTTTTAGGGGTGCCTCTCATAAAAGAGAACGATAATGATGGTACTGAACTCCCAAGGGCTAAACTCAAGTTTAAGGGTGCTGAGGAGAGCTTGGCTGCTACTGAAAACCGTTCCTAGGAAAGGCTTAGCCTAACCTTTGTTTGGGTCACAGCCCATGTGTACAGTGGGGACCTTCTTCAAGATGGTGAGCAACATGACCTACTGAGATGGCTATATACTCTACCATACTGTCCTCAAAGCCTCTTGTATTTGGAGAGAATGGGTTTCCTACTTCCTATATCACTCAATAGTATATGGAGAGGGAGGGAGAGATTTTAAAGGACTTGGCTGACCTTACAAGTCTGAAATGTGTAGGATATACTAACAGTTGGGGAATGTCAGACAATTTTAATGCGTTCTTTAAAAAAAATCCTCTAAAGATTTATTATTATTTTATGTGTTTGAGCATCCTATCTGCATACCTGTAAGTGTGCTATGACTACTCCTGGAGTCAGTGGGGACTAAAAGAGGACACCAGATATCATGGACTTGGGTTTGGTTAAGGTTGTGAGCAGTCCTGTGGGTTCTGGGAGCCAAGCCTTGGTCCTCTGCTCTTCTCTTCAGCCCCTCTACGGTACATTTTTGAGGCAGAGCCCCTTGCCATACCACTGTGTATGTTCTTAGCGCCTTCAACTGGTTGAACAAGGTCCAATACAATATGGACAGTAATCTGTTTTCCAAGGGGGGGGGGTGTGAATCCCTTCACAGTGACATCCATGCCTCCTCATAGCATACATAGACAGAAAGACATACAGTGTCAACTTGGTTGAAGGGCATGGAGTTGGGTAGAAGTACATTTCCCACAGTGGAGTTCATATCCTGCTCCAGATGAGCTGGTTTGGGCTCACCAACCGAATTGTAGTTCTTGGTGGACAGTATTCATTTTCTCACCCTTCTTTGCCAGAGAAGATTATCTACTGTTCTGTCCTGTCCCTCCTCCAGTGTTTCTCTTTCTGGTAGTTTAAGGTGCCTTGTTCTAGGAACCTTCTGGTCATGTTGATTCCATTGCTGTGCCCATAAGCAAGCAGTTTGGCGGCTACTGAAAACCGTTAAAATATAACCTTAAAAATAACTCATTTATTTCACAAGCCTGTATTTATCCACTAACCGGTTCTTTGCTGAGCATGGGCTACAAATGTGGCTGAAACATAGCCTCAGCTTCAAGCCTGGATGCAAACGATCAGTTACTACAGTCTCCCTGCAGATGGTAGTAGATCCTAAGTAACTAGTCTGAAAGTGACATTCAAGGGACATTGCTCCTTCATTATAGGTGAATAATTTACTGTTTCTTGTATTCTTCTAAGCAGATCCTTTGGTTCTGTGTCCTTGAAGAATGATGGTGTCCTGCAGACATCCCAGACCTCAGCCTTAGCTCCCCTCTTTCTGGGAATATTAAGTGGATTTTTTTTTAATGTTAAAAACCCAAGGCAATAAAAACAAATCTGGACTTGTAGTGTGTGAGGTCCCTGTGTCTCCATGCTGACATTACATCAAGCTCATAATAACACTATCCGTGTGTCACATAAGCTTGTAGCAAAACCCAGAGCAGAACAGCCTGCAATTTATTAAGAAAGAGCAGTGGTTTAGAAGTCCCCAGGGTGAAATAACACCACAGCTCTTTCTCATTTCTGAGAACCAATATTAAAATTATGAAGAGGAATTTAAGTATTGTGCTTTGAAGCAGGCAGTAACTTTCTTCTGATTTTGTTTAGCTTTAAACACCTCTGCATCGTAAATATACAATACTCGAATGGTTCTTGCATACAAAAGAGAATTTTCTTGTCCTTTATTCCTTCATAAATGCTCATAACTAGAGCTTTTTTAAACTCTACTCAAAATTTGGCAGAGGTTGTGAAAGTCAACAAGAGCCATGTTTCTGGGAAACATGAAAGGCCACATGTATTTGTTATTTTCTAGTGTCTAAATTTAATTTCAATGGTGTGGTTTCATGATTAGAATTGTAATGTCCCAAATGAAGAACAGGCTTATAGATTTGGTTGTTTATTTGCTACCTTGGTTGGTTGGTTCTGTCTTTTTTTGTATAGGTTCAGGTTTTATAACTAGTTTCTTAAGTCATAGAACTATAGCATTGCTAAGTTTGTTTAAGCAAAAAAGCTGTTCATCTCTGATAAGCTGGTGTGGCAGGATCGTTACTGTACACATCAAGGGCTGGCCTCCTTCCTGCTTACTTGAAGCTGCCATTGCAAACCTACATGGTCTTTAATCGCGCTCAGAAAACAACATCAACAACAATAAAAGCCTTAGAGTGTTGGGCATATTTGAGCTAACCTCAAACTGCCACCTTCTGGATTGGCTAAGTGAAGATCAGAGGGGCTGCCAAAATTCACAAGGTGAAAAATTTAGAGCAGACCAAGGCATCCTGTACCATAGCTCACCCTCAGTCTGCCAGGAAGGCTCTTTAACTAAGGTCACCTACTTCTTTGTTTTTCCAGAAAGAGGCCAACCTTTCAACTTCCCTGGGTATTTGTTTTGTGGCCATCAAGTCCTTTTCTGGGTGCCCCATTCTGTTAGACTAAAACCTATGGAGCTATTGTTTGGGATTTGAAAAATATAGTGATTGTAAATGCCTTTAACTTTGCATGCATATATAGCCTGGTCTGTTTTGGAAACATGGAACATTCTTTCCTGGAGTTATGAGACAGTTTTCTGTCATTCCTACAACAAATGACAATTCCTGGCAGGGCTGTGGAAGCCCACCACAGAAAATAACAGTTTTCCGAGAGGAGACATCACAGTCCTGATGTGAAAGACTAGGGCTTGTGTTACTGTATAACTGAATACTGTCATGTAGGTGGAAAATGGAAGGTAGCAGGAAGAGCAGAGGGGAAGAACCCAAAGTAATTTCTGAAGGAAGTCTTGGATTTGGCAAGTTCTGTAGCTTTACATTTAGAAAGCCAAGAAAGTAGTTCATATAGTCACTCAACCACCACTAGATACTTGCTGACCACAGCTTTATTAGGCCCTGTGCTAAACACAAAGATGAATAAGTAACAGGCAAAAACTTCAAATGCTATATTACACTGTGGAGAATCCAGACCATGAACAGGCAATTCCAGTGTCCTGTAAATTGGAGAAATGCAGGGAGATATTTAGACAAACAGGATGGAAATGACAACAGAACCCTAACCTCACGGGTTACTTATTGGTGAGCAGAGAGATCAACATAGACTGCTCTGCAGAAGCTGGTCCAGGCCAAGGCACAACTTTAGTGAGTACAGGGGCCAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGCAGCTGCAGGAAAGAAGCTGTCTAGGAATGGAGGAGGGCAGTGCATAGATAGTCCTGTGCTTTCAAAACCAGACTTCAATTACTAATTGTAGTAGCAGTGCCAACTGAAATGGTTTGCTGTAGAGAAAACCCTATTTTAGTGTGGTTTAGCTGTTGTAAAATTAGCATCACCAAGGACATGTGCATCTAATGTCCCATGGGCAGAGTGTGGATTCTGCAAGTGGGTCTCTGACAGCAATGATGTCTGAGGCAAGGGAACGTAAGAGTGGAAGTTTGATTTTAGAGACATCACGTGTGAACCTGAGTTTGGGGGCATGAGAGAAGTCAGAAGAGATAGGCAAGCCAGAGAGGAGAGGGAGAATGCAGTGGGAATTGATAGAGATTATTCATAGTTTTTTCCGATCCCTGTGACTGTTTCATTTTTATTTTCTATTCAGCACAAGTCAGGAGCTAGATGGGACTTGGTGCCGGGACTCCTGGCATTCTTGGCTGTTCCTTGATGGGTTCTGTTGTAAAGACAGCATAGCTCTACTCTGACCCAGAAATGCCTTCTCTAGAGGTGTAGCTTGATTTCATTCACCTTGTGCTTACTGTATGATCTCTTCCTTTTCCTCCAAGTATGAATGAATGGCTTAACTTCTGAAGATACATTACTGTGCAGTCCAGTGTATATTTACCAAGTGCTTACGGATGGGACGGATGGTTTCAGCTTGTTAACCCTTAGCTCTGTTTATTGACTGCCTTCACTATCAGCAGACCCCACCACTGCCTCCTTTGCACAAGTGACCTTGTGACTCTTGAGACCAGCGCTCCCTCCAAGGCATTCACTGTCTTCTGCCTTGTGACATTGTAAGATACTGGTCCATCTATGGCACATGTGGGTCACAATTCCTTTGAAGGTGAATGATCCTTTCACAGGAGTCACCTAAATACCATCAGAAAACACAGATATGATTCATAACAGAGGCAAAATTACAGTTATGAAGTAGCAATGAAAATAATTTTAGGTTTGGGGTTCACCATAATGTGAGGAACTATATTAAAAGGTTAACAGCATTAGGAAGGTTGAGAACCACTCACCTGGGGCAATAGGCATTTAAATGCCTAGAGATTTATGAGGGTCATTTTATTAATTAGAATTATAGCCAATTTACTTGAAATATATCCATTGTTTAGGACACTGGGTGTGTTCATCAGACCATGACACAGAGACTGTCACAGTGGTGGGCAGTATGGCTTTGGGCAACATGGCTACCTAGGAGACATGGTTGGGGAGTTGGTATCATACTTATTGCCTAGCCTTACGCCCAAATCCTTCTGAGCCCCTAGTAAGACCCTCAACCTCTTGGTGTCACCCTCGTCCCTCTTAATTTCTTTTTGGGTTTGTCTCTATCACTTCAAATCTGTGATTCATTTATGGTTTCTAGGGCCCATGCTCTACAAGGTAAAAATCAATTTTTATATCTCAATTTTTTTTCCTTTTCAATTTTGACATATGTACAGGGAAAACAAAAGCAGTGAAGGATAAAAATGATGGCTTCTGAGCACATATGTGGAGAGGGTTGTCCATAACATTGGCCACCATTGTTTCTTTACCACCAAACACTAAAAAGAATGAGTGCCTTGTTTGCTGTATACAGCTTTCATGCAGCAGTCAAAATGAGTAGTTTCAGGAAGTCTTGGCCTTTTCCGTGCAGGTGTTTCTCAGATCCTGTGTGACAAAGAAAGATATGGGAAAAGGCACATATGTATGAGAAAACCCTGTGGGATGGAGTTGGAGGATGAACTAGTGAATCATGCCATGAAATATAGTTTTTATTTGAAAAAATAAGATGACAGACAGACTTCAGTTATCTTGAGCTGGACACTTGATAGCTTCCTTCTCAGAGAAGGAGTTAAATGAACTGTCACTCTTAGAAGCATAACTGACAGTAATTGTTGCAATGATAAAATGAAGCTTCTAACTAGGAGCCTGGAAGCTTCCCACACTTGAAAACTGATGAGAGCCATGGTTTATTGACCAATATGGTATTTGAATGATTTATAATGGAACATAACAATATTTAGGATCATTGCCCAACTTGTTTCCTGAGTATTCAAATTAACATTGAACAACATTGCAAAATTTTTTACTGGTTAAAACACATTTTAAGAGCAATGGAGAATAAATTATAAAGTGGCAAGCTAGTTGGATCGTTGGATTTATAGCCATTCATTTTAATTTGTTTAAAAAATTTAATTTTGGAAGACTTACAATTTCAGCCACAAAATAGTACTTTTTACAAGGAAGACAGCCTGAATGATAGGCACAGACACTAGAATGCCAAAAGAAACCTGCTTTTCACTTCATAATAAAAGTAGGTTGTCAGTAATCTTTTTGGACCAAAAAAAAATTTTTTTTTAAATTCATTGATATGCTTTGAGATGCCATAATGCAACCAGCTTTTAACAAACTACCACTTAACAAGTTTGAGTGAACTGTCAAAGAATATTCACAATTTTCTGGAAGAGCTTATAAAATCTTCTCTTTTTAAAAACCTGTATGCGTATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAACAAGTCCTGGTAAAGATTAAAATATGAATTTATTGCTCTGTATAATATAATCCTTATAATTCAAAATTTTAGATTATTATGTAATTTTAATTAAAATATAAATAATGCAGTTCACTGCAAAAATGCAAATCAGTGCTTAACCAATGTGGTCAAGTTGCCTGAAAGTCCTCAAGGGTTTTTGCATTATCTTCACAAAACTTAAATTTCTTGAAATCTTGAGATTTATAAACTGTTTTTTTTTTTCTTTCTAAGAGCCATGTAGTAAATATTTTAGGCTTTGTGGGCCCCAGGGTCTCTGTTTCAAAGTCACTTGTGCCAGAATAGACTGTCTTGTTTTATACGCTTTTTACATATGTCTGGTTTACAGCTTTATTCACTAAAACAGGGGCAGGCCACATTCAGCCTACTGATAATAGCTTGCTAACCCTTCCAAACTTTGCCCCAAAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTAAGTACCCTTATACATTCATTGAACTCAGAACTTGTCTATAAAGGTACCTTTTGGAATCATTGCTTTAGTGGGCATGCACAGTAGCATCTACTCTAATGTTCTAATGAGTGGGATGTAGACTCTGAGAAAGGAACAGGAGAACCCTTTTATAGAGAGCAGGTTGTTGAGAATATGGTTCCAGTAAGTACAGCATCCATGTATCATTGTGACTCCTAGCCGTTGTCTTTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCACTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGATTGGGGGGGGTATGGGGGACCTTTGGGATAGCATTGAAAATGTAAACAAGGAAAATACCTAAAAAAAAAAAAAGAAATCTATTGAGTTTGCCTCTCACTCACAGAACCAAATCATTGTGCTTGCTGCAAGTTAAACTTGAAATGTGCGCGGGATTCTTAAAGCTAAAGAAATCCCGTTACTGTTCGTACAAAAGCCTTGACCACTGGTGATACTGCTAGCTTCACCAATTGCAAGGACTCCCTGGTATCCACAGTGGGAGAAGAGAATTCATCATGAAAACAAGACTTTTTCTTTTAAATCTAAACTTTCACTAAAAGATGAGAAAGCAGACTTAAAGGCAGTTTTTAGACTGTTTAAGAGAAGGCTGCCAGATTATATAGCAGTTCTTATCATGACCTCAGCTCTACTGGCTACAAAGACCCAAGTGAGCTGCTTCTGTGCTCCAAGCATCTCTACCTGTTCCTGTAGATCCAGCTTCTACATGTTTTAAAACTTTAAGGGAACTGATTACACAAAATATGATATTTTACACAGTATAAAAAAAATAACAAGCATCTAAATGTAGCAAGCAAAATAGGTCACCCCTAATCCACTGATTTTGTGTATGTGTGTATGCACAGATATACACACATAGTACTTTATCAAGAAACAAGGGGACGCATCCAAATAAATGTATCATTTGGTGACTTTGCTAGTAGTGAGCCTCATATAGTATATTTTGAAAAAGAAGATGTGACTGTTACTAGGAAGTATAACTTGGGACTATATTTATATCTCTGAGGTGGTATTGACTGGTGTGCCCTAGGGCTGTGGGACTCTTGAGTATCCATACTAGTGTCTCTAGGCAAGCTGTCATCCCAAATCAACATCAAATTATATAAAAAAAACTGTGTATATGTACATTAACTTTATTAGTGATTTCTAAGTTTCAGATATTGCAAGACTTGTTTTAATGCTTTTTCCCTCAATTATGTGATTTCACAGAGAAAAAAAAATGTCACTTATGTGCCCTTAG
Seq C2 exon
ATTCTCATGATGCAGTTTTGAGATTTAACTCTGCCCCTACACGTGGCTATGAGAAAGATGTCGGAAATAAAACCACAGTACGCATCATTAATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024172-St6gal2:NM_172829:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.5=23.5)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: