HsaINT0159840 @ hg38
Intron Retention
Gene
ENSG00000144057 | ST6GAL2
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10861]
Coordinates
chr2:106834049-106844034:-
Coord C1 exon
chr2:106843035-106844034
Coord A exon
chr2:106834147-106843034
Coord C2 exon
chr2:106834049-106834146
Length
8888 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
TGTCACTTATGTGCCCTTAGATT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GTTCATTCTGCCACCCATCTGCATTAAGACACAAGGTGCTGACCGCAGAGACCTGCCATGAAACCACACTTGAAGCAATGGAGACAACGAATGCTTTTCGGAATATTCGCTTGGGGGCTCCTCTTTTTGCTGATTTTCATCTACTTCACCGACAGCAACCCCGCTGAGCCTGTACCCAGCTCCCTCTCCTTCCTGGAGACCAGGAGGCTCCTGCCGGTGCAGGGGAAGCAGCGGGCCATCATGGGCGCCGCACATGAGCCCTCCCCGCCTGGGGGCCTGGACGCACGCCAGGCGCTGCCCCGCGCCCACCCAGCCGGTTCCTTTCATGCGGGGCCTGGAGACCTGCAGAAATGGGCCCAGTCCCAAGATGGGTTTGAACATAAAGAGTTTTTTTCATCCCAGGTGGGGAGAAAATCTCAAAGTGCTTTCTACCCGGAGGATGACGACTACTTTTTTGCTGCTGGTCAGCCAGGGTGGCACAGCCACACTCAGGGGACATTGGGATTCCCTTCCCCCGGGGAGCCAGGCCCACGGGAGGGGGCTTTTCCGGCTGCACAGGTCCAGAGGAGGCGGGTGAAGAAGAGGCACCGGAGGCAGAGAAGGAGCCACGTGTTGGAGGAGGGCGACGACGGCGACAGGCTGTACTCCTCCATGTCCAGGGCCTTCCTGTACCGGCTCTGGAAGGGGAACGTCTCTTCCAAAATGCTGAACCCGCGCCTGCAGAAGGCGATGAAGGATTACCTGACCGCCAACAAGCACGGGGTGCGCTTCCGCGGGAAGCGGGAGGCCGGGCTGAGCAGGGCACAGCTGCTGTGCCAGCTGCGGAGCCGCGCGCGCGTGCGGACGCTGGACGGCACCGAGGCGCCCTTTTCTGCGCTGGGCTGGCGGCGCCTGGTGCCCGCCGTGCCCCTGAGCCAGCTGCACCCCCGCGGCCTGCGCAGCTGCGCTGTCGTCATGTCTGCAGGCGCAATCCTCAACTCTTCCTTGGGCGAGGAAATAG
Seq A exon
GTAGGTCTCAGCGGGGGGACCAGGTCGCCCTGTCTTGAGCCAGTGTGTCCCTGGGGGCCGGTTCTTTCTGAGCGCGCCTCTGGATCTCTGACGGGGCAAGCTGGGGTCTCCGCACCAGGTGTTCCTAATATTAGCTGGAGATTCTTCAGGTGCTTTCCCATTGCTGGCACAGAATGAGTCTGCCTGGGGTCACAGCAGAAGTACTCTTCGGGAGACTCTTAGAGCAGGGATTTGGGGAATGCTAGGGAGCAGGAAGGGTCCTCCCCATAGCTGATGCCAGTAGGCAGTGGAAGGAAAGCGCCGCCCTTTGCCCCCGGCGTCCTTCTCACTGTTCAGACTTCGTATCCCATAGAAACCGCAGTCTGCATGGATATGCCCCCAGGCTGTGGCCCCTGAAAGCCCGGTGAACCCATCCTGCAGTGGGAATATGGGAAGGGAACAAGAGGAGGAGGCAAGAAAGCAGAAGCTGCCCAATCAGGGCGTCAGCTCCAAAGAGCAGGGTGCATGAAGATAATATTGGTTACTGTGAGCTCTGAGAAGAGCCCAGCTGCTGTTGGGAACATCTTTCCCATGGGAGAATAAGTTCCGGCCTCCCAACTGTTGGCGCAAATCCAACCTTTGGGGCACTGCCAGTGCACCTACCAGGGACCTTCTCCAAGATGGTAAATAACATGCAACACCTGGGCTTCCTCCCTCCCTGCCAGGCTCTGCCTTCACATCCCTGTCAAGAGCCCTGGAGCACATGTTTCCCAGCTCCTGTATCAGTCAGGGTTCTCCAGAGACTCACACCAGGAGGATATGTGTCTATACAGAGACAGATTTATTTTAAGGACTTGACTCTCATGATCGTGAAGGCTGGCAAGTCTGAAATAGGTAGTGCAGCCCAGCAGATGGGAAACTCAGGCAGAGTTTCTGTGTTGCTGTCTTGAGGCAGAATTGTTTCTTTTTTAGGAAACTTCAGTCTTTGTTCTTAAAGCATTCACCTGGCTTGAGGAAGCGCACCTGCATTTTGAGAGTCGTCTGCTTTTCTCAAAGTCTAGTGATTTAACTGTTAATCACATCTTAAAAACACCTTCCCAGCAACATCTGGACTAGTGTTTGACCAACCAGCTGGGCACTGTGGCCTAGCCAAGATGGCACACAACATTAGCCATCACTATTTCTTCCTAGTTTTCAAGTAAAATACCAATTCTAATCTTTTTTGATTGATGGGGCCATGGCAGGGTTCAAATACGTTTCCCTCCTGCAGAGTGGTGTAGGTTCTGCACCAGATGGGCCTGCATTGGCTCTCCTCAGAATTCCCCTTCCTCGCTGGATCACATTCATTTCCCCACCTGCCCCAGACTCTCACCCTGTCTTGCCAGAGATACCCAGGCTCTTGTGTTGCCATAGCTGGGCTCTCCCTCAGCAGTTTCAGATCCCTTTGCTCCCGGAACCCCCCTTCTTCCCAGGCTAATTCCACTGCTAGACCAGTCAGCAAGCAGCTTGGCCCTTTAGGCTCATTCATTTGACAAATATGTGTTTAGCCCCTAATATGTGCTTGATTCTGTACGAGGAGCAGTAAAACAAATGTGAGTCAAATACAGCGTCAGCCTCAAGTCCAGATATAAAACAATCATGTCCTGTACACTCTCACAGTAGGCGTTGTTAGGGCATAACTGGTCTGGAAGTGACATTCCGGGAGTGTTGCTCCCTCTTTGCAAATAAGTAATCTTTGTTGTCTTCATTTTAAGCGGATCCATTAGTTGTTCTGTGTCCTTGAAGAGTGGCCTATGTTCCAGAGTTCTCTCGGAATAGGGTGAAGCCACTGTAGGCAGGCTCAGAAGCCCAGATCTCAGCTCAGCAGAAGTCCTTGGGCATGAGGCTGAATGAGAAATATTTTTAAAGTTAAAAAAAACAAGACAGTGAGTCTGGAATCAAGGTCTGGGGTACCTGTGTCCCTGTGCTGACATTACAGCAGGCTCATAATAACACAGTCCATGTGTCATATAAGCTTGTAGCCAAAGCCAGAGCAGAGCAGCCTGCAATTTATTAAGAAGAAGCAGTGGTTTAGAGGTCCCCGGGGTGAAATAACACCACAGTTCTTTCTCATTTCTGAGAGCCAATATTAATAATGTGGAGAAGGAATTTAAGTATTATGCTTGAAGCAGGCAGTAACTTGCTTCCGGTTTGGTTTTGTTTTAAACACCTCTGCATCAGAGGTGAAGATCTGGATTGCTCTTGCATGTCAGTGGGCAGTCCCTCGTTCTTTTTTTCTGCATAAATATCCCTGACCAGAATCTTGTAAACTCTGTTTACAATTTGGAAGAGAACGTGAAAGACGCTGAGAAGTCCATGTTTCTGGGAAACTTGAAATGCCAGTTATATCTTTGTTAATTTCTAGTATCCAAATCTAATTTATTTGGCATGCACTTGCATGAGCCTTTATGATTAGAACTGTAGAATCACAACTGAAGAACATGCCTGGAAATTTCTTTAAAATTCTCTTTATTGTTTTGTCTAGGGTTGTTTGGATCAGATTTTGTATCTACTATTTTAAGAACATGTAACCATAGCATGGCTCAATTTGTATAAACAAAAAGTTTCATTTGTATAAGTTGGTATCTCAGCATCAGCAGTGTACATGCCAGGTGCCGACCTCGCTCCTTCCTGTTCACCTGAATATATGCAAGCAAACCCACATAGTTATGAATGGCTTGCAGAATACAAACAAACTCTGGCAGCAAATTCCTTCAGGCAGCTTAGAATATTGGGGGCATGGTGTAGCGAAATTCTTGTTGGCCGCTAAGCATCTACTTGTGAATTGGCTAAATGAAGATCAAAAGACTTACCAAAGATCACGATCTTATGAAAAATTGAAGGCAGAGCTAGGAAGTGTCTCAGATGATCACTGCTTATCAGCCCTACCTATGTTCTGCCAGGAGGAGCCCTCTCCATGCTGACGTCAAAGGGAGACCCAGTCAGTCTCAGGTTTGCTTACTGGCTGCCCTTTCGCTCCCCCTGGTGTTTGCTCCACTGGCAGTGCAGCCCCCATCCCCCTACCCTTCTGTTGGAACTGGGTCACACAATGGAATTGGTTTTGGTTAGAAAAGTAGAGCAGTTGTAAACACTTCCACTGTGAATGTGTTATTGAAAAACAAACTAATTGTTTTGGAAACCTGGATCATTCTTTCCTAGAGTTATAAGATGATCTGTTTTCATCCATGCATATAAGCAATAATAATTTGCTTCTATGCAGTGCTACTAGCATTCATGTGGAAACATGTTACAGAGCAGAAAGGTCTGCTCTGAACCACCAGTAATAGCCTTCATGTGGGAAACCAAGATCTGTGTACCTGAAACTCGAATTCTGGCAAGTGCATGGGAAATGGGACATGGAGGGAGAGACTGGGGGTGGGATGCATAGACTGGTGGAGAGGGCTTGAGATTTGACATGTCCTGTTACCTTTTAAAAAAGCAAGAAAGAAGAAAGCAGTCCATATACTCATCCAATTAGCATTATTTATTGATCACCAACTCTCCACCAGATCCTAGGCTAGACACAAAAATGAATAGGTCACAGGCTCAACTATCCATACCGGCACACTTCAGTGGTAAACAGACAATTCCAGTGTTGTGGGTTGGAGAAGGACAGAGAGATATGTAGGCTGACAAGGCAGAAATGACAACGGATTCCTAACTCCCCTGAGGGCTGGTAGAGAGAAGAGATTGGTAAAGACTGCTCCAGGGAGAGGAGACCAAGCTGAAGGCCCAGCATCATATGGAAGTGAGAAACAGCATGTTGTGCAGGTGGTGAGAGCTACAGGGAGTACATGGGCTCGTAGGGACAGAAGAGAGAAGCAGGCTTGGAAGGCAGATCATCTTCCTGGATGCCCTTGCAAGCCACTCTATGAATATTAGACTTCACTTAATTGAAATCAGGTACCACTTATATAGTACAGACAAGGCCCTGTTCAAAATGCTCTTGTTTTTTTTGTTTGTTTGTTTTTTTGCTTTTTTGAGATGGAGTCTCCCGCTGTTGCACAGGCTGGAGTGTAGTGGCACAATCTTGGCTCACTGCAACCTCCACTTCCCAGGCTCAAGCTATTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCGCCACCATACCCGGCTAATTTTTGTGTTTTTAGTAGAGATGGGGTTTCATGATGTTGGCCAGGCTGGTCTTGAACTTCTGACCTCAAGTGATCTGCTCGCCTCGGCCTCACAAAGTGCTGGAAGTACAGGTGTGAGCCACTGTGCCCAACCCAAAGTGCTTTTTATGTGCTAACTGTTGTAAACCTTACAACCCTAAGTGATAGATAACTTTGTTCCCATTTTACAGATAAGGAAATGAAGGTACCTCCAGTCACATGTGCAGAGTCTGGATTCAAACCCCAGTCTGGGTCTCCAGAAACACTAGCTCTCAGCCCTGTGCCCATGATGTGCAGCCATTGCAGATAGTCACTGTAGAGAGATCACTCCAGAGCCTGGACTTGAGGGTGCAAGGGAAGTACATCAAGAGGTGAGGGTTACAGGTCCTGGGGAGAAACAGGGCTCCCAGGGTGATGGAGCTCCCAAAGCGATGCTTTGTCCAATCCCAGGCAGGCCATTCTCTAGTGACTGGAGGCTTGCTCTCCTGCTGTTTGAATTTTCTCATCAGTGTAGGAGAGGGGGATGATGTGGTGAATGGGGCCTGGGGCAGGGCGGTGACCGGGTGCTGGCCCAGCAGCTCCTTGAAGGGCTTTAATTTTCCTTCCATGGATGCACTTGTCTGGCTCCATTCTCAAGGACAACACAGCATGGTTCTGGCCTGGAAATGCCTTCTCCAGAAATGGAACTTGACTTTCTTCCCCTTGTATTTGCTGTCTGACCTATTCCTTTTTTTCTAAATATGAATGGACAGCTTCTATTCTCACAGTGCATTATCAAGGAATGCACAGCCAGGTGTACGTTTACAGAACGTGTCTGTGTGAGAGACAGTCTCAGCGCACCCTCCCCTTCCATCCCAACCCCACGCTGCTCACAGTGGCTGTTCATAGAGGGCTTGCACTGGGCCTAGCCACAAGCCTACATGACCCTGCCTCCCTGCCCTCTCCATGCAGGTGGCCTTTTAACTCTGCAGACTAATACCACCTCCAAAGGAATTACACTGCGTTATCTTTCTGTGCCCTGTGCCTCGTGAAGTCCTTGGATGGTTTAGAGCACAGCTCCACAATAAGACAATGGGCATTTAAATGCTGGGATGTTTTCAAGGGTGATGCAATTAATTCAGATTTATTAGTCAAATAATAGAAATGCACCCACCGCTTGAGGCCCTTGGGTAGGCTGTGTCTGAGGGGTGGGTAGCGTGGTTTGGAGAGAACTGAGATTGAGGATTGCTGGCATCACACTTCCTCTCTGGCTTAGGGCTGATTCCCTCCCAGCACCTGCAGTCACCTCGCTGGTGGAGTCTCCTCTCACTGTCTGCAACCAGAGGGTTTCCCTAGCTTAGCAGTGGGAACAGTGAGATCTAAGCTTACCCTTAGCCTTTGCAAGACCCTTTCGAGGGTCCATGAGAAAAAACTATTCTGGTAAGTATACTCAGAGTTCTTTTCCTTTCAGTTGTTGACATTTGCACTGGTGGTACAAACACAATGAATGATGCATGAGACAGGGGCTTCTTAGCACAAGTCAGGGCAGCAGAACCCAAAGCTCAACCTTTGAATACACGTGTTTTTCAGATTCAGTGGGGCACATGGGGAAATAGGAGAAAAGCACTTATGTGTGCCAGTTCACAAAGGAAAAGCCCTTGGGTAATTGCACTGTGAGCCGAACTAGCCACTTTTTTCATGAAATACAATTTTAACTTGAAAAGAAACGTTAATTATTCAGACTTGGATATTTGGCAGATATATTCTCAAAAAGGAATCAAGCGAGCCTGTCACTTTTAGGAAAATAACTGATAGTATTTGTTGCCAATGATAAAATTCAAGCTTTGAACCATGAACTTGGAAGTTTTCCAGACTTTAAAAACTGGGGAACTCCATGGTGATACTAATCAATGTGGTGTTTCAATTCTTTTTTTTTTTTTTTTTTGAGATGGAATTTTGCTCCTGTTGCTCAGGTTGTAGTGTAATGGTGCAATCTTGGCTCACTGCAACCTCTGCCCCCTGGGTTCAAGCAATTCTACCTTAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACGCCCAGCTAATTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGGTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGATGATCCGCCCACCTGTTCCTCCCAAAGTGTTGGGATTACAGGCCTGAGCCACCATGCCCAGCCAGTGTTTCAACTCTTTATAACAAAATGCATCACTATTTGGAATGTCTGACTAACATATTATATATATATATAACTTATGTATAACTATGCCTAGCTGATAGTTTTCAGCTGATCATTGTACAATATTATACAATTATGCGTGAGTGAAAGATCCATTTTAAGAGAAAAATAGACCACAAGTTTTAATGTAACAGAGCACAAAAAGTTCATTGATAGGTTTCAGATTCCAAATTGTAACCAACCCTAAGAAACTAGCCCTCGTAGAGTCTTGTTAGGTATCAAAGAAGAATATTCACAGTTCTTTGGAAGGATTCTTTAAATAGCTCTCTCAATTCAACAGTGTGTCTGAGCCTTCATATACTTCAAATAAAACAACATATTGCAACAAGTTGAATTCAAAAGCAGATGTGAGAAACCAACTTTCTAAAAAACCAGACCTTAAAGAGACTTGCAGACATTAAAAACGGTGCCAGTCTTCTCAGTATTCTTTTGGTTTTTGAAAATATAGAGGTTTTTTAAATTGAAAAAAAGCTGTTTTAAAATAAATTAATAGACATTTTAAAATTCCGTTTTACCTTTTAGTATGGTAAATATCAGTAGATATATTCCATCTGCCTAAAAAGTGTTTGGATTATCAATAAATTTCAAGAGTCTACTGTTTTGGGTAATCTAGTTTTTCTACCTCAAATATTATTTGAATTTTTTGACAAAACATTATTCAATAAAAATAAATAAGAAATCCATTACCTCAATAAAGTATGAACAAATCCTTAAATTGTGAAGTAAAGAACTGGTTTTAACTTGGAGGCATTCATGTATTTTGGCATCATTTACACAAAGAATAGATCCCCTTGAACCTAGAGATTGGCAGACTTTTTTACAGAGCCTGGTAGTAGATATTTTTTGTTTTGTGAACTGTATCTCTGTCTCTGTCTCAACAACTCAACTCTGCAGTTATAGACAGCATGTACAGTGAGTGTGTCTGTGTTATGGTGGAACTTGATTTACTAAAACAAGTGGCAGGTCAGATTTGGCCAGAAGGTCATAGTTTGCCAACTCCTGCAAAATTTCCCCTAAAAGAACATTGCAGGGTTTTGATGACACAGCCACCTACGCTTTATGCATTCACATGTTCCAAAAGTGAATTAATTTTGGTGCTAAAGCTGGAATTTGAATTTTTTTAAGTTTAGGGTTTGTCAGTGAAGGCACCTTTTTAAACATTGTTTTAGTGGGGGCATGCATGGTGAGTTTCTGCTATTTGGGGAGCAAGAAGACAACTCCAAAGGAGCAGATAGCAGGAACTCAGGGAAGAAGGCGGCTGCCTTAGGCACTTGTGCGGGCTCGGGGACTATAAATGCAGCTCCCCTTGGGCATGACAGAAATACTTCTTTTCACCTCTCCCTCACAGACAGGCACTGTCCTTGCTCCAGGCCGAGCTTGGAATCTGCATGAGATATTTAAAGCTAAAGATGGCCCTTAGAAAATTGCTTTCTTGCTCACTGACTCTGGCTTCAGGCTGGTTTCTAGGAATTTCAAGACGCATGTATGTTTATAGGCTGCCTTCTGTAAAGGGAACATATCCCCTAGTCCCAATGCTAAATCAGGTGAACCCACTTTCCTGTGCCTCCCACTGTTCACCTCCTTGTCAGCCTCCAGGATAGGGGTACCTTGTTTTCATCCAGGACCTTCCAGCCCAGCATTCAGAGAACTTGGGCAAGTCGGGCTGTCAAGTTGAACGAAGTGAGATGTAGATTTACGTTGCATTCATAGTTCAAGTTTGGTGAAGCACGGTGTGTGGTTATAGAACATAAGAGCCCTGGCAGCTGGTGGCATTGGTGGTCTCTCCATCTCACCCATCCTCAGGGGCTATGGTGGTCTGGCAGGCTATTGCTGCTAATGCAGAATGCTCTTAAGGTTGCTCTCACACAGGTCTTCTTGCCATCGGCAGCAGTATGTAAGGCTGCGTCGAAGTCAGGGCTGACTTTCTTTCTTTCTTCAACATTACATGCAGAATCTCTGCTTAAGGACTGGCTTTCTTTTTAAGCATACACCAGCACCAAAAAGCAGCCCTTGCAGGGCTGGCTTTCTTTTTAAGCATACACCAGCACCAAAAAGCAGCCCTTGCTTTCTAGTGTCTTTATCTGCTCCAGTACAGTCTCCCTCAAGATGTATTGGAAGCTTTGGGAGAATGGCTGCATCAAGCATGTCACTTGTAAGAATGTTGAAAAGGTAGCAAGTATCTAAATATCACTTAGATCATACAGTCTCGCCCATAATTGAACAGATTTTACATCTATATATATCCATATTGATGTTTCCTCCAGCCAAGATCTCATTCTCAGTGAAGAGTAAATTCTCTGAAAATCATGTGGGCATATCTTAACTTTATTGGTGATGTATAATTAGCTTCAGGTATTGAAAGATTTGCTTTAACATTTTTTCCTAGATTATGTGATTCTACAGAGAACAAAAGTAAGCTTGTCACTTATGTGCCCTTAG
Seq C2 exon
ATTCTCATGATGCGGTTTTGAGATTTAACTCTGCTCCTACACGTGGTTATGAGAAAGATGTTGGGAATAAAACCACCATACGCATCATTAATTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144057:ENST00000361686:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(27.0=22.5)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains