BtaINT0152506 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15954569-15957590:-
Coord C1 exon
chr23:15957390-15957590
Coord A exon
chr23:15954781-15957389
Coord C2 exon
chr23:15954569-15954780
Length
2609 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TCACTCCCTTTCTTCCCCAGGTG
3' ss Score
13.12
Exon sequences
Seq C1 exon
ACGAGTGAAGAAGATGAAGAGGTAGAGGAGGAGGAGGATCCGGAAGAAGACAGGAAATCCACAAGAGAAGAGGAGAGTGAATTGCCCAAGTCCCCGGAGCCGCCGCAAGGCCCGGTCCTGGCTCCCGCAGAGGGGCCGCCCCTGCAGGCCCTGGGCCAGCCCTCGGGCTCCTTCATCTGTGAAATGCCCAACTGCGGGGCG
Seq A exon
GTAAGTGTCTCCGTGTCCTCAGAGGCTCTGGGACTGGTGAGAGCCGTGCGCACAGCCGGCTTAAAGAGATGATGCCTTTTACAAAGGAGGGTGCTCTTCCAGCAGTGAAAGCTGGGCAGAGAGAATCCACGTAGCCAGGCTTTTCTTTCTTTCATCCATTTACTTGTTTGGCCCACAGATATTTCTGGAGTCAAGCAGAGTCAAACACTGCCAATGCTCAGAGGACGCAAGTCCTTTCCTGGCCTCAGGAAGCAGGTGATTCAGGCTCTGCAGCGGCCTTGGCCTCCAGAACTCACACTTCCTGTTTCTTGGTGCCTCCCGACTCCTCTGAGCTGTCGCACCAGGCGTGCTCTGGAAACATGCATTGGAATGCCGTGAAAGAGCCCCCAGAGGAGTCTCCTTTTATGGCATAATTACAAAGATTTGGCTGAAGTTTATCTTTGTACTCTTTGAGGGAAGGGAAAAAAAAAGATTTACTAAGCAAATTAATCATGTAAACAGGCTGAAAGCGTGTCTGTTTAATTACTTAACCTAGTACTTTTTATTAATAAGTACGTTAGAAGCATCATCTTGCTAAAATAAAACCAATTCCCATTTGATCATTCGTAGTGCTAAAGCCTTACAGAATCTGTACTGGCTGATGTAAGACTGTGTATTTTGAAGAATAGATTTTTTAAATTGTTAACTTCGGACTGTCAGTCATCCACTGGTCTCCTGTGAAGTGAAAGTCACTCAGTTGTGTCCGACTCGTGCGACCCCATGGGCTGTAGCTCTGTCCATGGAATTTTCCAGGCAAGAATACTGAAGTGGGTTGCCATTTCCTTCTCCAGGCCAGTGGTTTCCTACTCATCTGAGTTGCTGAGCTTTTCTCAGATCGGGTTTCTTAAAGCTGTACACAACTGTACAGGCAAGTTCTAGAGGTATTATGCAAAAAAAATTAGAACATATGATTCATTTCATATGAAGCCCTGTTTCCCCCAAGTTAGTGCTTATTTCTGCTTGTGTGTTACATAGGATAACACACTTTTCCAGAGTGTATTGAATGCTGTTTATTGAGTCTGTCACTTAGATGAAGATAGCAGCAGTCTTTCAAATATTTTAGACTCTAAAGCTGAAATTTACTTGATTCACATCTAAGAAAAAAGAAGTAAAAAAAAAAAATGATATATACATCTTGCATTACCTTTGAAGAGAACATAAATTGCTAGCTTGTTTCTGTCTTTGATGTTTAAAGACCTAGATGCTTCACTCCATCATTACCGTACTGTATAGAACACTTCCATTCAAAAAGTGACTTTAAATGACGGTATTTTTGGTGAATTTGTTTAGAAATCGGTTGCTTTCTCAGTTCACAGTTTGGGTCTACAGTAAATTCTTTACTGTGAGGGGAATCATCTTTTACTTTACCCAATCAAAAATGCTCAGCGGGATGAATGTTTTTTCATGACTTCAAAAAAACAACAGGGGGAAAAAAAAGTGTGTTGGTTTTATTCGTTGCCTAACCGTGGAAGTTTTGGTTGCTAAATCAACCAAAGATTTTTTTCCCCTGCAAGACTATAAACAGAACTCATGAACTTAACACAGCAACCGTCTGTGGCCAGGTCGTTCAGTGAGTACTCACATTAGCTGGTGCATTTAGCGATTTGGAAGTCAGGGCTCTAGGAATTCAGGGGGTGGATCACTTCCCTTTACAACAGTGAATCTCACTGGGGAATGATCTTGTTCCACATGAACATTTGGCAGTGTCCAGAGGGAGACATTTTTGTCACGTCTGGGGAGGTGCTCCTGACATCTGGTGGGTGGAGGCCAGGGATGCTGCTAAACACCCCATGATGCAAAGGACAGCCCCACAACAAACAGTCATCCAGCCCAAAATGTCAGCAATACTGAGGCTGGGAAACCATGCTTTACGGCAGACTTCAAAAGACTGAGTCATTCCCCTTTTTATCATCCTGCAGTGAAATTTGGGGGTCTGAAATGTGGCTTTAGCACTGGGCTACTGACTGGGGCTTAGATATAACATAGAATAGAGCAGAGCAGCTAATCAGTGTTTTCAGAGCCGTGTCTCTTAGGCTTCTAGGGATTCCTAGGGGAGATAGATAGAGCTGAGCAAATAGACCCAGTTCTGGGATGCTGTCTCTTTCAGCCAGAGCACCTCTGCTTTTAACTTTGAGCTTTTGAATAAAATTTTTTAAGTTTAAAAAAAAAAGGAAAGAGGAGGGGAAAATAAAGGGGAAAAAGTGGAAGGAAGTTTCTGGCTGAAAAAAATATTGGAAAGCTGGTTCAGACCCCCCTCATTCTATAGATGGAAAAAATAAGGCATTCAGAGGGGAGATGGCCCAATGACCTCCGTGTGTGTTGGAGGCTCTGGGTTGAGCCCCCAGTCTTTGGTCGTAACAGTGATTGTTGTTGTTGTTGGCACAGCATTTGTGGTTGTGGTATTTGATCTCTGCTTTCTGTGGCATTTGCCCAGAGTTTGCTTATGTAAAACCCCTGTGCCTTGTCATTAGACTCTGTTTCAAGTATCCCATGTTCTACCGATGAGTAACTAATAACCCTAATTTCCTTTTCAGGACTGTAGATGTCATGTCACTCCCTTTCTTCCCCAG
Seq C2 exon
GTGTTCAGCTCCCGGCAGGCACTGAACGGCCACGCCCGCATCCATGGTGGCACCAACCAGGTGACCAAAGCTCGGGGCACTGTTCCCTCTGGGAAGCAGAAGCCTGGCAGTGCCCAGAGTGGGTACTGCTCGGTGAAGAGCTCACCCTCCCACAGCACCACCAGCGGCGAGACAGACCCCACCACCATCTTCCCCTGCAAAGAGTGCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321:ENSBTAT00000020376:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.831
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]