BtaINT0152511 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15977972-15979455:-
Coord C1 exon
chr23:15979068-15979455
Coord A exon
chr23:15978039-15979067
Coord C2 exon
chr23:15977972-15978038
Length
1029 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTCTGGTTTTTGTGCTTCAGACA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GAAATTCCCAAGAAGCACCAGCCAGGCGCGGCCAAAGCCGAGGAAGCCCTCAGGAGCGCGCCAGCAGAGAAGAAGAAGTTCCGGCACCGGCCGGAGCCGCTCTTCATCCCGCCACCGCCCTCCTACACGCCCAACCTCGCCGCCTCGCACTCGGGCGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCACGGGTGCTGGGCGACCACCTGCTCCTGGACCCCGCCCACGAGCTGCCCCCCTACACGCCCCCGCCCATGCTCAGCCCGGTGCGCCAGGGCTCGGGGCTCTTCAGCAACGTGCTCATCGCCGGCCACGGCCCCGGCGCCCACCCGCAGCTGCCCCTCACGCCCCTGACGCCCACGCCGCGCGTGCTGCTCTGCCGCTCCA
Seq A exon
GTGAGTCGCCCCCAACCCCGCCGCCGCCACCCCGGCTGTGGGTGCTGCCCTAAGGCTCGCGTTCTGCCCTTGTCTCATTCACCTCACAGACCTTTGAGGTGGCCCACAGACCTTTGAGGTGGCTCGGACCGTGTGCTGCGTGCTAGGAATTCTTAGAATACTTACCCTCAAGGGAATCACAGTCTAGTCGCGGAGACCAACGCATAAAGCTCATTAGGGTTTCTCTGAGATGAGGGAGGAAAAAAAAACAGTCGAAGTGCGCCGTGGAGAATCGTGTTCAAACACCCAAAGTAAATGTACTAAGTACACGTACAAATAGGATTAGCGGCAAGACCACACCTCCACATTTTAGCACGCGGTGTAAAGATCAAGGCCTGTAGCAGGATCTCTTTCTAGAGCAAGAGGAATGTCATAGAACAAGAAAGCTTAACAGGGGAATTCCCTGGCGGTCCATTGGTTGGGACTCCCCGGGCTTTCACTTGCCAAGGGCCCAAGTGTGACTCCTGGCCCGGGAACTGGGATCCTGAAAGCTGCACAGTGCAGGCCAAAAAAAAAATTAATGAAAAGAAAAAAAGAGTAGTAGACCAGAGAGATAGCTGGCCCTCCTTACTCTGAGAAGTGCGTGTGTGTACGGCTGAGTTGCTTCAGTTGTGTCTGGCTCTGCTGTGACCTCATGGACTGTGGTCTGCCTGGCTCTTCGGTCCATGAGATTGTCCAGGCAAGAATACTGGAGTGGGTATCCATTCCCTTCTCCAGGGGATCTTCCAACCCAGGGATCGAACCCAGGCCCCCTGCATTGCAGGCAGATTCTTTACCCTAAGAGCCACCAGGGAAGCCAGGTGTTAAGAAATGGGGAAACCCTAAGCCAAGTTGCTCCACACTCCAGCTCCTCAGGGACTGCGGGGGTAACTCTTGCGTGGTTTGGGTAGGAGAGGGTCCCTACCATGACTGTTCAGGTAACTGCTTGTTTAGTTTAGTTTCTTTAGTACCTTCTCTGCTGACCAGTGACCTCTGGTTTTTGTGCTTCAG
Seq C2 exon
ACAGCATCGATGGCAGCAACCTGACGGTCACCCCGGGGCCTGGAGAGCAGACCGTTGATGTCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321:ENSBTAT00000020376:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=NA C2=0.739
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGAAGTTCCGGCACCG
R:
GTCAGGTTGCTGCCATCGATG
Band lengths:
345-1374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]