BtaINT0152513 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015321 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr23:15976351-15976727:-
Coord C1 exon
chr23:15976588-15976727
Coord A exon
chr23:15976455-15976587
Coord C2 exon
chr23:15976351-15976454
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
CCTGTCTTTGTTCCCAACAGTGG
3' ss Score
9.91
Exon sequences
Seq C1 exon
ACGCATCAACATTGGCTTGCGATTCCAAGCGGAGATCCCAGAACTCCAGGATGTCTCTGCCCTGGCCCAGGACACACACAGGGCCACACTAGTATGGAAGCCCTGGCCAGAGCTGGAAAACCACGACCTCCAGCAAAGAG
Seq A exon
GTATTGACAGCCTGGGAAGAAGTGGGTAGGAAGGGCTGGATTTCTCCCAAGGGCCTCTGGCTCTAGGATCAGTGTGTCTTTCTGGTGACACTGAGCTCTGTCTGATGCAGTGCCCTGTCTTTGTTCCCAACAG
Seq C2 exon
TGGAGAATCTCCTGAATTTATGCTGTTCAAGTGCGTTGCCAGGTGGAGGGACCAATTCTGAATTTGCTTTGCACTCTCTCTTCGAGGCCAAAGGTGATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015321:ENSBTAT00000020376:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(78.9=93.8)
A:
NA
C2:
PF0144819=ELM2=PD(19.3=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCAACATTGGCTTGCG
R:
ATCACATCACCTTTGGCCTCG
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]