BtaINT0154405 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15377123-15381634:+
Coord C1 exon
chr11:15377123-15377223
Coord A exon
chr11:15377224-15381397
Coord C2 exon
chr11:15381398-15381634
Length
4174 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTTTGTTCTTTATGCTGCAGCAA
3' ss Score
8.33
Exon sequences
Seq C1 exon
TGGCTATTAAGTGCAGTAAAAACAAATCCAGTCCCCAGGAGGCTATACAAGTGCTGTCTTCAGTTCGACTCAATTTACGGGGCTTATTATCTAAAGCAAAG
Seq A exon
GTGAGAGTGAAATGTGAAGTATTTAGAATTATCATAGGAAAAAAAAGTTTTTGGTGTCAGCCAGCTGCTCTTAAGTTTTCTTTACATGAGGGATAACTTTAGGCCCACATTTGATTTTACCTTTAAATTTTGTGTATTTGTTTTTGGCTGGCTGGGTCTTCGTTACTTTGCACGGGCCTTCTCTGCTTGCAGCGAGTGGGCGCTGTGCTTCATTGTGGTGTGCCGGCTTCTCTTTGCAGCGAGTGGGCGCTGTGCTTCGTTGTGGTGTGCCGGCTTCTCATTGCAGCGAGTGGGCGCTGTGCTTCATTGTGGTGTGCCGGCTTCTCTTTGCAGCGAGTGGGCGCTGTGCTTCATTGTGGTGTGCCGGCTTCTCATTGCAGCGAGTGGGCTCTGTGCTTCATTGTGGTGTGCCGGCTTCTCTTTGCAGCGAGTGGGCTCTGTGCTTCATTGTGGTGTGCCGGCTTCTCATTGCAGCGAGTGGGCTCTGTGCTTCATTGTGGTGTGCCAGCTTCTCATTGCAGCGAGTGGGCGCTGTGCTTCGTTGTGGTGTGCCGGCTTCTCTTTGCAGCGAGTGGGCGCTGTGCTTCGTTGTGGTGTGCCGGCTTCCCTTTGCAGCGAGTGGGTGCTGTGCTTCATTGTGGTGTGCCGGCTTCTCCTTACGGTGCCTTCCCTTGTCGCGGAGCCTGGATTCTCGGTGCCTAGGCCTCGTTGGCTGCGGCTCCAGGCTCTGGAGCACAAGCTCTGCAGTGGTACACAGGCTTTGTTGCCCTGAGGCACGTGGAATTTTCCCAGACCAGGGTTTGAACCTGTGTCCTCTGAAATAGCAGGGGGATTCTTACCCACTGGACCACCGGGGGAGTCCCTCCCATTATGTTTTAGATATTAGCCCCCAGGTGGTTGTGCTGGTGAGGAGATCATTGACCTACTGACTAAACCACCCTACTCATGGGTAACTTAGGAATCTTTGAAATTAATATGTATAATCCAGCTCTTGATGCTTTCTTTAAACAGTGCTCTTCTACTTACATCACTTTTCCCCCAAATGTGGCATATATACTACTAGTAGCACTTGGGTAAATGTTGTTATTTTAATATATATTTATTTCAGTGCATATTAGAAAAAGTGTAAGTAGCAATGAAATCTATAATTTCATGAATATTATTGCTTATTTTCTATTTACAGTAGTGTTCTAATGTTTTCCTTAAAAAATACTTTTATTTGAATAAAAAAATTTATTTAGAGACAGATATTAAGCAGGTGATGTATGGATTTGACAAAAATGTTACGGTAGATGTCAAACTCAGGTTTGACACGTAAAACGTATGCTGTCAGTTTACAAGTACCACCCTGTGAACCGGTGCTAGGAGGGGGACAGCTGAGAGTCATCGAGGGGGCTCTTGAGTAGATTGGACTCCACATCTCCACCTGTGACGGAGCAGGTCTGGGGCAGAGCCTGGGAAATCTGTGTTCAGTTTCTCAGGTAGTTCTAACATGTAAACTAGGCTTGGAGTATACCACTGGGAACAAAATTTGAAGTAGTATAACTTCTAGTACAAATTAGCACTTTCTTTTCTAATCTTTATTTGCCTTCCCTTTTTAATCTTGGGTCTCAGCTAATTTTAACTCACTTCTGAGAGCCAAATTCATGGCATGTGAAGGTCACTTTTGGACACAGGTAAAAACCTTTCCAGAGGGTGCATTTTTATTAATTGCATGATCTTTTCAGATTAGAGCAGCATTTTTGTCTCTATGTAGATTATTAACTCATTTGCTATCTTAATGAGTGTGCCTGCTGGAACCAGTTTTCTGTAATCTGGGAGAACTGTATTTTCTCCCAGCTTGACAGCACAGCTTCAGATTGTGTGTGTCTCAGAAAGCTGCAGGAGCTCTCTTAAAGGTCAAGGTAGCAAACTTTTTTTGTGACTCTTATTCCCAAGTTAGGAGCTCAGTTTCCTAGTTTCAGTGAGGTCATCAACTTACCCATGATTGTTTATTTCTTCAGGATGTACTCCACAAGTTTCTCTTCTCTGTGCAAAGCTTATAATATATTAATTTTACATAAACCTACACTTATATATGACTTAAATAGTCTTTTTCTAATGTAATTTTACTTATTTATTTTTGGCTGCGCTGGGTCTTCATTGATGCACACGCTTCCTCTGGTTGCAATGAGCAGGGGACCACTCTCTAGGTGCGCTGCTCAGCTTCTTACTGCAGTGGTTTTTCTTGTTGCAAAGCATGGGCTCCAGGGCATGTGGGCTTCAGTAGTTGTGGTTCCCAGGCTCTAGAGCACAGGCTCAGTAGCTGTAGTGCACCAGCTTAATTGCTCTGCGGCATGTGGGGTCCTCCTGGACGAGGGATGGAACCTGTGTCTCCTGCATTGGCAGGCGAATTCTTTACCCCTGAGCCACCAGAGAAGCCTGACTTAAACAGTCTTGTATGTACTGTCAAATCCATTCATATTGTGGAATTCCAGACATTGAAAATGAGGCTTCAGAACATCATCTGTGTATAGATTTTGTTCTCATTGGATCTCAACTGGATTATCCAAAAATGGGAAAAATTGCTTCCCAACACCTCCTTTGAAAGCACCTTTTTGCATATAATGTTTGGGAGCCCCTGATTTTATAGTAAATCATTTTTACTTTTCTGCTTTATAACAAATTGGATTTGCTGAAAAAGAATTGCCTTTTCTAGAACACTTTAAAAAGTGAAAATGACTGAGGATAACTGTGTTAAGTAATAGGCTCAGTTCACACAAATCTCTGGTCCTTTCCTGCCAGGCCTGGCACGTCATGAACATAAACTCCTAGATAGAACCTAGAAACTCACCTAAAGTCATCCAGTTCTTGTTCGGCCAGGACAGAGTAATTCCTCAACCCTCAGCACCCCGTCCTTGTACAGATTGGCTGCCAGGGTGGTGGGGGTTGGGGGGTAGGTGGCCTGAGAGCAGTTGGTGAGAATGCCAGAGAGCCTAGAGACAGAGCAGATATAACACTTACGCTCCATGGGACCCTCAGCAAATTGTTCTTTTCTGCCTAAGCCTCTGTCTCTTTCTGCTTCCTCCTTACTTTATAGGGAAGTGAGGCAGATTTGTGATGATTTATAAGCTCTGTAATTCTTAGTAAAAATAAATATGCCATGTAAGTCCAAGTTACTTTGCTCAGAGGTGTTTTTTCTACTGCACATCGCAGCAGTTGGTATGTCGGTCTGTTGTGAAATGCTGTGTAAGACGTGACTACACAGTTACGTGGCAAAGCGTTACAAAACAGCTCTTTGCTCCATAAATCACTGTGGGAAACTCTAAGCTTATCATGTGATGACGCCTTCACTCAGAACATCTTCAGGATTCCCTTTTTAGAATAGCTGTCAGAATGATTGCTGTCATCTGTGGTGGTGGTGGTGGCAAATAGTCATATTTTAATGATAAGTTTGATTTTTGTAAACAAATAGTCTTAAGTGTGATGAAAAGGATAGATGGTAAGCTGAGTAAATTACATATCTGATTAAAAAACACACACACAATGTGGTCATAAAACCCTGAAGCTGGTTTTCCTGCGCGCCTGTACTGGCTCAGCAGGCAGCTCCTAGAAAGGCGTTCCAGAATGTGCCAGCCGTGGTGGTGTTACTGAAGGATGTTGTGGTATTGCCCCACCCCAAAACAATTCCTTTTACAGAAGGAGCTCACTTTTGTTTTAATGTGCTGGACTTTTTTATTTTTACCCAGTCTTGATGATTGTTGTGGCCTCTTAGTCCTAAGCCATAATTAATTTTCAAATAGCATAAAGAGTATGATTTATATGAACTTGAATATAAAATGTATTTGTTTTGCTTGTATACACAGCAAATAGATTTGTTTTGCTTAGATGAATAATGTCTATTTATCCAAAGACCATCTTATGACATTGAAATGAATAATACAATCAATACTCAAGATAACCATTTCCAAGAGGCGGACCCATTTGAATTTACAAGTTGAAGCATGTTGTTTGATTCATCCATTGTTGCAGCTCGTTCGTTTCCAGGATGGTGAATGGAACAAACACGACTATTGCTGCTATAATATTGTGTTTTTATTATATAAAGGGAATTTTAATTCTGTACTCTGTGTCTATGTTTCTTTAAAGAGATGGTCACTGTTTTGATAATTCTGCTTTGTTCTTTATGCTGCAG
Seq C2 exon
CAACTTTTTACAGATGCGGCAAGTGGAGAAATTGCCAGGGAATTAGCTGATGAAATAGCAGCTATGGACACCTTAGTGACAGAGCTTCAAGACCTAAGCAACCAATTTCGAAATCAGTATTGACCATCCTGGGAACAGTTTCTGGAAGAGGTGTTTCACTTTCCAGAATTTCTTTTATATCTGTGTATCTCAAACTCAAGATACTGATTTTTTTAAATAAATTTTTCTTGTATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010:ENSBTAT00000046862:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development