RnoINT0157652 @ rn6
Intron Retention
Gene
ENSRNOG00000042932 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:RGD Symbol;Acc:1305264]
Coordinates
chr6:21735834-21737297:-
Coord C1 exon
chr6:21737197-21737297
Coord A exon
chr6:21736066-21737196
Coord C2 exon
chr6:21735834-21736065
Length
1131 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTACTGTTTTTGCATTGCAGCAG
3' ss Score
8.05
Exon sequences
Seq C1 exon
TGGCTATAAAATGCAGTGAGAGCAAGTCCAGTCCCCAGGAAGCTATACAAGCACTTTCTTCAGTCCGGCTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
Seq A exon
GTAAGAAGGACCTGCGGGCTCACTGGAACCGTGTGGTGAGGTCATCAGCCGCAGGTCACTGCTGCTGAAGAAAATAAATACGTAAAAGGCAACTGAATTGCACTTTACAAAGTGAAAGTGAGCAGAGATCACTGTTAGAGCCAGCCAGGCCCAGTCAGCACAGGCTTGCCTTCTGTCGCCTGCCTAGAGATGTCAGGAAATGAGCTCCTAGAGCTGTTCCCCCACCTCCCATTGCCCAGGAAAACAGTCAGTACAAGCATGTGCTCAAAGACTGTGCATCTCTAGGAAATTAAGCAGCCTCCACTCGTAGGTCGTTCAGGGCAGCCCCTCTCAGACGCAGCAGCATCTCTGCCCTCAGCACCTCACGTGTACAGGTCACAGCCAAGCGTGGCCTGAGGGCTGCACGGGGAGCACACTGATGCTCGGCAGATCACCCCTTCTTTCTGGGCCTCGGTTTCCTCTGCTCCTGCTCGCTTCACCGAGAAGGAATGCAGGATGCTGGGAGTTGTAAGCACTGGGTGATGCCTGGTTCAGAAATCTGCCATGTGTCTTCAGGTTCTTGGCCTAAACGATGTCCTCTCTACTCAGCACATGCCGCGATGTTTCCATCAGTCTGTTAGGATGTGTTATTGAACAATACAAATCTACTCAATTTGGATGAAAAGGATGTATAACAAGCCAAATAAATTATATGCCACAGTGAGACAGATGTCTACTGTATGTGCGTGTGTGCAAATTGCCCATTTATGCTCATAAAATCTTGAAGCTGGTTTTCCTGACTCACCAGGCATGCACAGTAAATAGAATTCATTGAAACACTATTGTATAATACTGACAAAAGCAGTCAACATTTAAGTACAGAGCAGAGATTTGAACCCAAGGCCCTGGGTCCTCTGGGCAAGTGCTCTACCAGTGAACTGTAGGTGGAGACTCTTGAGTCTGTAAGTTCTGGCACACGGTTAGGAACTGTACCTTGCTGGGGTCTGAGCGGACGCTGCATTGCTGCTGCACAGCTGCAGGGGCATCGTGCAGAGAGCACTGGGATTCCAGACTGCTGTCCTGACTCAATCGTGTCTGTGTTGCTTGGAAGAAATTCTCACTGTGGATGGCCGTACTGTTTTTGCATTGCAG
Seq C2 exon
CAGAATTTTACGGACGTAGTGAGTGGAGACGTCTCGGGAGAGCTAGCCAGTGAGATAGCAGCTATGAGAGCTCTGGAGGCCGAGCTGCAGGACCTCAGCAACCAGCTTCGAAACCGGTACTGACTGAGAATCAGCTTGTGGCCGTCACTTATGTCGTCTCCAATTCCTCCAGTACCTGTAGATGAAACACCAGATGCCAATTTTTAAAATAAATTTGTTTGCCGGCAAACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042932:ENSRNOT00000006505:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATAAAATGCAGTGAGAGC
R:
TTGCCGGCAAACAAATTTATTTT
Band lengths:
329-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]