GgaINT0086707 @ galGal3
Intron Retention
Gene
ENSGALG00000010538 | TTC27
Description
NA
Coordinates
chr3:32610035-32613474:-
Coord C1 exon
chr3:32613374-32613474
Coord A exon
chr3:32610285-32613373
Coord C2 exon
chr3:32610035-32610284
Length
3089 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CATTTCTCTCTGTCACACAGCAA
3' ss Score
6.62
Exon sequences
Seq C1 exon
TGGCTATAAAATGCAGTAAGAAGAAATCCAATAATCAGGAGGCTTTGCAGATACTTTCTTCAGCTCGGCTTAACTTACGTGGCTTGTCATCCAAAGCAAAG
Seq A exon
GTAGGAATGTTTGAATTACATATCTTTATTAAGTTACTGGCACCCATTTTTCTGTTTTATGTCATTTACAGGCCAAATAATATCTTCCTATCCTGGTGAATCATCAAAAAGATGTTCACCTCTGCACTAAGGATTCCAGTTGTACATAGACTTCTACTAACCTTCCTGCAAGGATTTAACTGAAATAAACCTACTGTTATAAAATTTCAGTGCTATCTTTCAGACTGAGTTAGAATTTTATTTAGTGTTGGGCATCCTGACTGAAATGTTTGGAAGAAATCAGTTATTTTGAAGACTTATTCCTTTGGGGTGAGTAATCATGGGGGAGGAGTGGAGCAGCCTGAGAAGGAATGGCTTGTAAACCTCTAAAGGTGGGAGAAGTGTGTCCAGGCTACTTTGCATCACAGTTATTCATTAAAGGAGAAACTCATTTTAATTGGGTTTTTATGGATTTGTTATCAATTCAGATAGAAATTATTTGGAAAAGGTTATTGTATTTTAATTACATTTTGGTTTTGAAGCTGTAGTTTGTGCCTCCACAGCCCGTCACCCGTAGAGCCAAGCCTGTCTCTGCACCATTATTATCCTAATTTTACAGTGTATCTCACAGCGTGAGACACTGCCGGTGTTAAACTGAGGGCTGATACAGAATACATTTTTGTTCAAAGTGCACTTAGTATCTTATTCTTCCTGGCTGTGTGTGGGGTTACGTAAATGTGAGTTACAGAGTGTAAGTTTTATAATGTGTGCTTGGGTTACAAAGTGTTGATCCGTCATCAGTGTGTTAAACTTTATTTGCTCTCTTTTAAATTCTGCAATTTTAAGGATAAGAGACTAAGAAAGCTATATAAAGCAGACATAAGTGGGCTCCATAACTAACTGTGCTTACAGATACTAACATATGTAAGTCATAGGAATGTAATGAAAAAAGTCACAATTCTTATGTTGTGTTGTGATTCACAACATTATTTAAAAAAAAAAAAAGAGGCTGAAGGTGTCTGTAGGAAAAACAATTTTGCTTGTCATAGGTGATAAAAACAGGTCTTGGTGGTTTATCGCATAGTAACACAATCTTGAAAGATTAAGAATAGTTGCATCTAATGCATTGTTTTCTTAATTCCTGAAGGTGCTTCTATATTGTTGGCAGGTAATGGTGTCTGAGTTTTATGTCACTTTGCAGAAAGCTGACATGTTAGAGATAAAGCTGTTGCTGTGACTTGTTTGCATAATTTCTGATATGTCATTTTTTATTTGAAGTCTAATTGAATTTCTAAAGCGTGTTGATTGTGGTTTGAAAACTCAGCTATCTTCTGTAAGATGAAGTGTGCAGAGTTGTCTTTTGCTGCCTCATCAGTGTGTGATTGTTTCATGGTTAATTTTTTCTTTCAAGAGAGAAAAACACATGAAAAAGGCTAAGAGCTGACTCCGTAATTATGATTTCAGAAGGAATAAAGGAGCAGTGAAAGTAGGTTTTAAACAACAATAGTCCAAAATTCTATTGTCAGGACATGCAGATGGACCATATTAGTAGGTTTTTGACCACTGAAACAACATGGCTACTCAGATTTCCCACCTCTACTTAGATTTCCATCTCTGCGGAACCAGTCCCACCTAATGCAGCTCCCATAATGTAGCCGTACTCTGCTAAAGGCTGCCCCTAGAAAATGTGTTGTTAACAGGCTCCATTCTGAACAGAGCTTTCCGGGCAGTCGCATTCTCTGAAGTATAGCACAGTGAACCCTCTTCTGCTCCTTGGCTCCATGCGTCATTCAGATCTGACAGGTGGGGTCTTCCAACAGGAGAGAGGTCCTGGAGCTGTATTGTAAATGCATGAAATGTGGGTACTGTTGCGGGAAAACATGAGGCACAAGCCCAAAGAACAGTGGTGCATGAACTCTCCCCAGGCTGCATCTAGTTGAATAGAACTCTTTAACTGCATGGGGAAAAAAGAATAAATAATTATATCATTCTATTCTATTGAGCTGTTTTAGCCAGAAAGAACCAAACTTTTCTGTCACATGAGGTTTGAGGGCTGAAAGTCAGAGAAGCCTCTGTACTTGTATCAGAAACATGTTCCTATTTTTCTGGAAGATAGTTCTGTCACTGAACCAAGGAACGTTCTGAAACACACTGATGACTTTGGTTCAGGCTTTTTAAGTACTTTTATATATACATCTGTATTGTTCCATTATGTTTTGATGTTACAATGATGACAGATGTACTCCACAACAACTTTTGTTTTCTGGTTTTGTTTTTGTCTCTACATGTTGGCTTCTTCTTATGACAGATGAAGTGTTTCTCCCTTATTATGTAAAAGGAAAGTGAATTGCATATGTTTGGGTCCCCCTGCTGTGTTTATGTGGAGCAATACCTCTCAAAGCCTCCATATTGCTCAAGTGACAAATCCTGGTCTTGCAATAGCAACTTGTTCTGGTCCATCTCCATTCAGACCTTGTATCTCAAGGCTTCAGACTACCTCCCCCTTGATTTTCCTGTAAGGATGTGAATTTTATGATCGCTTCTGAGTTAGGTGCTGTTTGTGTTTGTTATTATCTTATTGTTTTTAAGAACAAACTATTTTCTTTATGTCAGTATTTTGTTTTCTCTTATATGACATAATTGTACACAGATGCATGTCTCAGACTATACGTGTCTTGACACCAAATGCACAAGTTTTATTTGGCTTTTTGGAGAAAATGACACAACAGTATGAGACACAGAGAAGATGGCCACTAAAATCCACAGCTAGTATTTTATCAGCAGGCAAATTGGTCAGCTGTAGTTGGCAGTCTGAGATGTTTCAGTTTGAGTTTCACAGCAGAGTCCATAGCATTCCATGCAATCAGGAGTCAATGTGTGCTGTGCAGTCAGAGCAGAGACCCAACCTTCCCCTCCTCAGAGAGATTCGGTCCCTTTGACGCACCTTCTGTTTATTAGTCACAGGATGGACTACAGGGAGAGCAACACCACTGTGAGTGCTAACAGTGTGAAAGGCAGCGGAGTAGTGGTGGGGAGGCTCCTGAGCTCACTCCCCTGAAACAGAGAAACTATAAATGTAGTTTAAACTAACATTTCTCTCTGTCACACAG
Seq C2 exon
CAACGCTTTGTAGATGTAGGAAGCCATGAGATTTGCAATGAGGTCGCTGATGAGGTGACAACTATGGACAACTTGATTGCTGAACTCCAGGAACTGAGCAACCAGCTGAGGGACCAGGGCTGAAACACAGACCAGATTTCGTGACTGGAAAACAAGAATGACGTATTTGTTTTGTTACAACCTTTACTGATGAAATGGTAACAATTGTAAAGCAACTTACATCCTCAATAAATGTTTTTCTGAACAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538:ENSGALT00000038001:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]