HsaINT0174280 @ hg19
Intron Retention
Gene
ENSG00000018699 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:25986]
Coordinates
chr2:33042524-33046118:+
Coord C1 exon
chr2:33042524-33042624
Coord A exon
chr2:33042625-33045882
Coord C2 exon
chr2:33045883-33046118
Length
3258 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTTTGTTTTTTATATTACAGCAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
TGGCCATAAAATGCAGTAAAAACAAATCCAGTTCCCAAGAAGCTGTACAAATGCTTTCTTCTGTTCGACTCAATTTACGGGGCTTGTTATCTAAAGCAAAG
Seq A exon
GTGAGAGTGACATGTGAATTAATTGGAATTGTCATATAGAAAAAGGTCATTAGTATCAGCTTATTGCTGTTAAATCTTCTTTTACATCAGTGATAATTTTAGGCGCATGTTTTATTTAATATAGCAGCCCCCTCATGGTTGGTTGTGTTGTGAGGATACTATTGGCCTAATGGATAGACCACTCTAAATGTGTATGACTTAAGAGTCTTTGAAATTGTCTGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCATTTGAGGTTGGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAATACAGAAATTAGCTGGGCATGGTTGCGGGTGTCTGTAATCCCAGCCACTCAGGAGGCTGAGGCAGGAGAATCTCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAAATTGCACCACTGCACTTCAGCCTGGGTGACAGAGTGAGATACCATGTCCCAAAAAAAAAAAAAGTCTTTGAAACTAATGTTTACAATTCAGCCCTTAATGCTTTCCTTAAATTAAAATAAAACAATGCTCTTGTATTTATTGTCATTTTCCCCCAAAGTGTGGCATATATGCTACTGGTAAACTTCTGGTTTAAATATATATTCATTTCAGTACATATTAGAAAAAAAGCAGACTAGCTCATCAAGCCTATAATTTCATGAATATTATTGCTTATTTTGTATTTAAAGTTGCAATGTAATGTTTCCTTTTAGAAAGACTCTTAAGTAAAAAAATTGACTTAGATAAAAATATTAAGTAGGTCGTATATGGATGTGAGCAAAATTGTTAAGGTAGATGGCTATTGAGGTTTGACAACTGAAATACGCCATTAGTTCACAAAAACTAACTTGTGTACCAGTGCTGGGCCAGAGATGCCTAAGAATCACTCAGGGAGCTTTATTGAAGACTGGATTGATTCTTGGGCTCTATCTGTGACCGATGTAGATTCAGGTCTGGGATGGACCCAGGAAATCTGTTGAATTTCCTATGTGATTTTACTCTGCAGCCAGGTTTGGATTATACCTCTGGAAGCAAAATTTGGACAAATATAACTTCTAGCACAATTTAGCACTTACTTTTCTAGCCTTTACTTGCTTTCACTATTGCATCTTGGGTTGCAAAGTAATTTTGACTTACTTCCGAGAGTAAGTCTCTGGCACAGGGAGGCCATTTCTGAATACCTTTTTACTCTGTAACCGCCTTTCTGAGTATTTTTTTGTTCTTATTAATGGTTTGATCTTTTCAGATCAAGGCATCATTTTTGCCTCTTTAAATAATTAACTTACTTCACTTTTCCTATTTATCTGCATGACCCAGGAGAACTATATTTCCTCCTAGCTTGGCAGCACAACTTCAAAATTGTGTCTCTCGGAAATCTATAAGAGCCCCCTCAAAGTCAGAGCAGCAGGGTTTTTTCCTGTGACTTTCCTTCCCAAAGTGGGAGCTTTGTTTCCTACTTTTGATCAGTGATCTAATCAAAGTAGTTTACTTCTACTACTACCACAGTAGTTTACTTCTTCAGGGTATACTGTGGCTTCCTTTTGTCTGTGCAAAGCTTTTTCTTACAAATTACTACTTTATGTAATCTATACTTGCATGACTTGAATAGTATTGTCTGTGCAGGTACTGCACACCTTCCCATATTATGGTAGATTCCCACATAATGAAAATGCGGCCCCAGAACATCATCTGTGTTTAGATTTTCATTCTCATTAGATGCCAACTGGATTATCCAAAAATGGGAAAAATTACCTCCCAGTGCCTCCTCTGAAGCATATTTCACATATATTTGGGAGTCTCTGGTTTCGTAGATCTTATGCCTTTTCTATTTAATGAATTAGGTTTGTCAAACTGAATTGCATTCCAAAAAAGTCACTTTTTTAGAATACTTTAAAAAGTGAAAATGAAGATTGAAAATGAATGAGGATAACTATGTTAAATTGCTTGCAGCCTATGTTAAATAGGCTTAATTGAATGAATCTCAGGTCTTTTCTTGCCAGGCCAGGGACTTCATGGAAATAAGCTCCTAGTACCTAGAGACTCACCTAACAAATCATCCAGTCCATGCTCTCCCAGGACAGAGTGACTCCCCTGCCCATTTGCACCCTGTCCTTGTACAGGTTTGCTGCCAAGAGTGGCATGAAGGGGCTGTTCATGAGAGTGCTGGAGAGCCTGGACACAGAACAGATTTGACCCCTTACAGTCTTTGGGACTCTCAGCAAATTATTCACTTTTTTCTAAGCCTCAGTTTCTCCGTGCTTCCTCCTTACCCCACAGGGAAGTGATGCCGATTGATTATGATTTGCAAGCACTGTAATTCTTAGTTTAAAAACGCACACACAAAAACCAAAAAAACTATGTGAGGCTAGGTTATTTTCCTAAAAGGTGTTTTCTCTGCTGATGACATTGGAGCAGTTCCTACTTCATTTTGTTATGAAATGCTGTACAAATCATGTAGTCAAATCCAGTGAAACAGATATTTGGCAAGCTACATAAATGATATTTCTGAATAAAACATATACACAGTCGCATGTACACACGTGCACATGTGTGCACACATACACATACCATGGGGTCATAAAATCCTGAAGTTGATTTTCTTGGGGGCCTATGTTGGCTCAGCAGGCAGTTCCTGGAGAGGCATTTCCAAATGTTTTCAGCTGTGGTAGCATGATTGAAATATGTTGCAATAAACCTCCCAAGGCAATTCCTTTTTCAGGGAGAGGACACAGTTATTTTTATTTTGCTGGACTTTTTTGCTAGGATAATCTTTGTGGTCTCTGAGGCCTAAGCGAAATTAATTTTCAAGTAAGTAGCATAAAGGGTATGATTTATATGAATTTGAACATAGAATATATTTGTTTTGCCTGCATACACAATAAATAAAGTCATTTTGTTTAGTTGAATTATGTCTGTTCATTCAAAAACCATCCTATAACATTGAAATGAATAATGAGAATTTAGGCAAATGCGTTGAAGAGCAGAGCTCATTTGAATTTATAAGTTCAGGCATGTTGTTTTGATTCACCCTTTAATTATTTTAGCTTGTACATTTCTTGGCTAGTGAACAGAAAAAAATGCTACCATTGCTATTATAATTGTATAGTATTATTATGCAAAAGGTTTTTTAACTCTATACTCTGTATCTATTTTATTTTAAAGAAATTTGTGTTGTTTTAATACTTCTGCTTTGTTTTTTATATTACAG
Seq C2 exon
CAACTTTTTACAGATGTGGCAACTGGAGAAATGTCCAGGGAATTAGCTGATGACATAACAGCTATGGACACCTTAGTGACAGAGCTCCAAGACCTAAGCAACCAGTTTCGAAATCAGTATTGATTCTGCTGGAAGCAGATTCTGGAAAAGGTGCTTTCACCTGCTGGTAAAAGATACATCTGTATATCTGAAATGCAAGATATTGATTTTTAAAATAAATTTGTTTTATGACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018699-TTC27:NM_001193509:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF061226=TraH=FE(22.8=100)
A:
NA
C2:
PF061226=TraH=PD(21.4=75.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)