GgaINT0086707 @ galGal4
Intron Retention
Gene
ENSGALG00000010538 | TTC27
Description
tetratricopeptide repeat protein 27 [Source:RefSeq peptide;Acc:NP_001012585]
Coordinates
chr3:30719387-30722827:-
Coord C1 exon
chr3:30722727-30722827
Coord A exon
chr3:30719638-30722726
Coord C2 exon
chr3:30719387-30719637
Length
3089 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CATTTCTCTCTGTCACACAGCAA
3' ss Score
6.62
Exon sequences
Seq C1 exon
TGGCTATAAAATGCAGTAAGAAGAAATCCAATAATCAGGAGGCTTTGCAGATACTTTCTTCAGCTCGGCTTAACTTACGTGGCTTGTCATCCAAAGCAAAG
Seq A exon
GTAGGAATGTTTGAATTACATATCTTTATTAAGTTACTGGCACCCATTTTTCTGTTTTATGTCATTTACAGGCCAAATAATATCTTCCTATCCTGGTGAATCATCAAAAAGATGTTCACCTCTGCACTAAGGATTCCAGTTGTACATAGACTTCTACTAACCTTCCTGCAAGGATTTAACTGAAATAAACCTACTGTTATAAAATTTCAGTGCTATCTTTCAGACTGAGTTAGAATTTTATTTAGTGTTGGGCATCCTGACTGAAATGTTTGGAAGAAATCAGTTATTTTGAAGACTTATTCCTTTGGGGTGAGTAATCATGGGGGAGGAGTGGAGCAGCCTGAGAAGGAATGGCTTGTAAACCTCTAAAGGTGGGAGAAGTGTGTCCAGGCTACTTTGCATCACAGTTATTCATTAAAGGAGAAACTCATTTTAATTGGGTTTTTATGGATTTGTTATCAATTCAGATAGAAATTATTTGGAAAAGGTTATTGTATTTTAATTACATTTTGGTTTTGAAGCTGTAGTTTGTGCCTCCACAGCCCGTCACCCGTAGAGCCAAGCCTGTCTCTGCACCATTATTATCCTAATTTTACAGTGTATCTCACAGCGTGAGACACTGCCGGTGTTAAACTGAGGGCTGATACAGAATACATTTTTGTTCAAAGTGCACTTAGTATCTTATTCTTCCTGGCTGTGTGTGGGGTTACGTAAATGTGAGTTACAGAGTGTAAGTTTTATAATGTGTGCTTGGGTTACAAAGTGTTGATCCGTCATCAGTGTGTTAAACTTTATTTGCTCTCTTTTAAATTCTGCAATTTTAAGGATAAGAGACTAAGAAAGCTATATAAAGCAGACATAAGTGGGCTCCATAACTAACTGTGCTTACAGATACTAACATATGTAAGTCATAGGAATGTAATGAAAAAAGTCACAATTCTTATGTTGTGTTGTGATTCACAACATTATTTAAAAAAAAAAAAAGAGGCTGAAGGTGTCTGTAGGAAAAACAATTTTGCTTGTCATAGGTGATAAAAACAGGTCTTGGTGGTTTATCGCATAGTAACACAATCTTGAAAGATTAAGAATAGTTGCATCTAATGCATTGTTTTCTTAATTCCTGAAGGTGCTTCTATATTGTTGGCAGGTAATGGTGTCTGAGTTTTATGTCACTTTGCAGAAAGCTGACATGTTAGAGATAAAGCTGTTGCTGTGACTTGTTTGCATAATTTCTGATATGTCATTTTTTATTTGAAGTCTAATTGAATTTCTAAAGCGTGTTGATTGTGGTTTGAAAACTCAGCTATCTTCTGTAAGATGAAGTGTGCAGAGTTGTCTTTTGCTGCCTCATCAGTGTGTGATTGTTTCATGGTTAATTTTTTCTTTCAAGAGAGAAAAACACATGAAAAAGGCTAAGAGCTGACTCCGTAATTATGATTTCAGAAGGAATAAAGGAGCAGTGAAAGTAGGTTTTAAACAACAATAGTCCAAAATTCTATTGTCAGGACATGCAGATGGACCATATTAGTAGGTTTTTGACCACTGAAACAACATGGCTACTCAGATTTCCCACCTCTACTTAGATTTCCATCTCTGCGGAACCAGTCCCACCTAATGCAGCTCCCATAATGTAGCCGTACTCTGCTAAAGGCTGCCCCTAGAAAATGTGTTGTTAACAGGCTCCATTCTGAACAGAGCTTTCCGGGCAGTCGCATTCTCTGAAGTATAGCACAGTGAACCCTCTTCTGCTCCTTGGCTCCATGCGTCATTCAGATCTGACAGGTGGGGTCTTCCAACAGGAGAGAGGTCCTGGAGCTGTATTGTAAATGCATGAAATGTGGGTACTGTTGCGGGAAAACATGAGGCACAAGCCCAAAGAACAGTGGTGCATGAACTCTCCCCAGGCTGCATCTAGTTGAATAGAACTCTTTAACTGCATGGGGAAAAAAGAATAAATAATTATATCATTCTATTCTATTGAGCTGTTTTAGCCAGAAAGAACCAAACTTTTCTGTCACATGAGGTTTGAGGGCTGAAAGTCAGAGAAGCCTCTGTACTTGTATCAGAAACATGTTCCTATTTTTCTGGAAGATAGTTCTGTCACTGAACCAAGGAACGTTCTGAAACACACTGATGACTTTGGTTCAGGCTTTTTAAGTACTTTTATATATACATCTGTATTGTTCCATTATGTTTTGATGTTACAATGATGACAGATGTACTCCACAACAACTTTTGTTTTCTGGTTTTGTTTTTGTCTCTACATGTTGGCTTCTTCTTATGACAGATGAAGTGTTTCTCCCTTATTATGTAAAAGGAAAGTGAATTGCATATGTTTGGGTCCCCCTGCTGTGTTTATGTGGAGCAATACCTCTCAAAGCCTCCATATTGCTCAAGTGACAAATCCTGGTCTTGCAATAGCAACTTGTTCTGGTCCATCTCCATTCAGACCTTGTATCTCAAGGCTTCAGACTACCTCCCCCTTGATTTTCCTGTAAGGATGTGAATTTTATGATCGCTTCTGAGTTAGGTGCTGTTTGTGTTTGTTATTATCTTATTGTTTTTAAGAACAAACTATTTTCTTTATGTCAGTATTTTGTTTTCTCTTATATGACATAATTGTACACAGATGCATGTCTCAGACTATACGTGTCTTGACACCAAATGCACAAGTTTTATTTGGCTTTTTGGAGAAAATGACACAACAGTATGAGACACAGAGAAGATGGCCACTAAAATCCACAGCTAGTATTTTATCAGCAGGCAAATTGGTCAGCTGTAGTTGGCAGTCTGAGATGTTTCAGTTTGAGTTTCACAGCAGAGTCCATAGCATTCCATGCAATCAGGAGTCAATGTGTGCTGTGCAGTCAGAGCAGAGACCCAACCTTCCCCTCCTCAGAGAGATTCGGTCCCTTTGACGCACCTTCTGTTTATTAGTCACAGGATGGACTACAGGGAGAGCAACACCACTGTGAGTGCTAACAGTGTGAAAGGCAGCGGAGTAGTGGTGGGGAGGCTCCTGAGCTCACTCCCCTGAAACAGAGAAACTATAAATGTAGTTTAAACTAACATTTCTCTCTGTCACACAG
Seq C2 exon
CAACGCTTTGTAGATGTAGGAAGCCATGAGATTTGCAATGAGGTCGCTGATGAGGTGACAACTATGGACAACTTGATTGCTGAACTCCAGGAACTGAGCAACCAGCTGAGGGACCAGGGCTGAAACACAGACCAGATTTCGTGACTGGAAAACAAGAATGACGTATTTGTTTTGTTACAACCTTTACTGATGAAATGGTAACAATTGTAAAGCAACTTACATCCTCAATAAATGTTTTTCTGAACAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010538:ENSGALT00000017153:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]