MmuINT0167152 @ mm9
Intron Retention
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:75261386-75262910:+
Coord C1 exon
chr17:75261386-75261486
Coord A exon
chr17:75261487-75262673
Coord C2 exon
chr17:75262674-75262910
Length
1187 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTACTGCTTTTACATTGCAGCAG
3' ss Score
6.89
Exon sequences
Seq C1 exon
TGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTTCAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
Seq A exon
GTAAGAATGACCTGCGAGTTCACTAGAACTGTGGGCTTGAAAGGCCATCAGCGTCAGGTCACTGCTGCTAAAGGAAATAAGTAAGTAAGTGAAAGGCAGACTGAACTCCACTTTAAAGTGAAAGTGAGTAGAGAGAACTGTCAGAGCCTGGGCAGGCTTGGTCTGCAGGGCTCTGCCCTCTGTTGTCTGCCTAGAGACGACAGCAGGAGGTCAGCTCCTAGAGCCCAGGTAAACAAACAACAATACAAACATCTGCACAGAAACTATTCATTGAAATAGCCTCTGCTCGCAGGTCTTTCAGGCCAGGTCCTCTCAGGACAGAGCAAGTCCTCTGTCCTCAGCACCTCATCTTTGTGCAAGTCACAGCCAAGAATGGCGTGAGGGCTGTCGGTGGAGCCCAGGGAGCTAAGTCAGATGCCCTGCAGGTGCAGCAGATTGATGCCCTGGAGATTTGTGGTTCTTTCTAAGCCTCAGTTTCTCGCTGCTCCTCCTTGCTACGTTGAGGAGGACTGCATGTTCATTGTGATTTGTAAGTACTGTGATTCCTGGGTCAGAATATGCTGTGTGTGTTCAGGCTCTTTGCCTAGAAGATGGTTTTTTCTTCTCCACACACTGTAGCAATGTTTCTGTCAGTCTGTTAGGATGTGCTATTGAACAATACAAATCTATTCAATTGGGATGAAAACAATGTATAGCAAGGCGAATACATTATATGTCACAGTGAGACAGATGTCTACTCTATGCAAGCCTACCTGCCTCCCCTCCCTGCCCATGTATGCTTATAAAATCTTGAAGCTGGTTTTCCTGACTCACCAGGCATGCACAGTAGATAGAATTTTGTTAGGACGAATGAACATCATTCATTCAAACACTATTGGATAACATTGACAAAAGCAGTGAACATTTACGAACAGAGTAGAGATTTGAACCCACGGCCTTGGACCCTCTGGGCAAGTGCTCTAGCAGTGAACTGTAGTTGGAGAGCTCTTGAGTCTGTAAGTTCAGGCACACAGTTTGCATTTGTACCTTTCTGGGGTCTGAGCAGACACTGCATTGCTGCTGCACAGTTAGAGTTGCACTGTGCAGAGAGCACTGGGTTCCAGATTGCTATAATGACTTAATACCATGTCTGTATTGTGTGGAAGAAATTTTCACCTTTTGATGGCTGTACTGCTTTTACATTGCAG
Seq C2 exon
CAGAATTTTACAGATGTGGTAAGTGGAGAAGTCTCTGGAGAGCTCGCCAGTGAAATAGCAGCTGTGAATGCTCTGGAGGCAGAGCTGCAAGACCTCAGCAACCAGCTTCGAAACCGGTACTGACTGAAAAGCAGCTTGTGGCGCAGTCTCTTCTGCTTTCTCCAATTCCTCCAGTACCTGTATTTCTGAAACACAAGATACCCGTTTTTAAAATAAATTTGTTTGCTGGCAAACGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-Ttc27:NM_152817:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATGAAATGCGCTGAGA
R:
AAAAACGGGTATCTTGTGTTTCAGA
Band lengths:
310-1497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: