DreINT0169137 @ danRer10
Intron Retention
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22925014-22927281:+
Coord C1 exon
chr17:22925014-22925114
Coord A exon
chr17:22925115-22926709
Coord C2 exon
chr17:22926710-22927281
Length
1595 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCTCATTTGTTATGTCGCAGCAA
3' ss Score
7.16
Exon sequences
Seq C1 exon
TGTCCATCAGCTGCAGCAGGTCGAAACGCAGTCCTCAAGAGGCTCTGCAGCTGCTGTCTTCAGCTCGACTCAGTCTGAAGAGTCTGACCACCAAAGCCAGA
Seq A exon
GTAAGTCAAACACACGCACACACTCTTTCTCCTATTACAGGCTTCTGCTTTTTCATTCATTTATTTACTTGTCGGCTTGGTCACTTTATTAATCCGGGGTTGCCACAGCGAAATGAACCACCAAATTATCGCAAATCTTTACGCAGCGGATGCCCTTCCAGCCTTAACCCATCTCTGGGAAATATCCACACACACACACACACACTCATACGGACAATTTAGCCTACCCAATTCACCTGTACAGCATGTCTTTGGACTGTGGGGGAAATCAGAGCGTAGGCAGGGAGAACATGCAAACTCCACACAGAAACACCAACTGGGCCGAGGTTCGAACCAGCGGCCTTTTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCCTCGCCCCTCTTCTGCTTTTTTAAAATGAGATTTTTTTACATACCTGTTTAATTGTTTTGTGAAAGTTGCTAATTTTTTGCAGCTCCTAGTTAGTTAATGCTACATTAGTGCACATACAGTATAGGCCAAAGTGAAACAACAAATGGTTTTACTTTCAAAAAGTGACAATTCAAAATGAAACTGGATGTTTAACAGGAAATTAGGTCATTGGATTTAGGTGTGAAAGTGAATGTATGATGGTAAGACTTTGATAAGATGATAATGATAAAACTACTGGCTTATTATCTGCGTATTATTAAGGTAATAACAGATTATTAGCTTTTATAAAAGATTATCTTATTTTACATTCCTAATTCTACTTAATACCTAAACCCAACTGGTACAATACTTACTATTAAAAAGCATCTAATTAATAGTTTATTCAGCCCAAAGTCTTAGTTAATGCTTTGTTATAGCGTGAACTGTACATTTAAATTAAGTGTGACCTGACACAAATTAAATTGATCTAAAGATGTACACAGTTAGGGTAAACAAATACCATTGTTTCTCTGGATTTACTACATTTATTAGGTACAGTATAAGTTTGAGTTGAATGTTATATTTATATTCTGTTTTAAATAATTTCACAATTACAATATACTTTCACCGGCCACTTCATTAGGTGCACCTTACTAGTACTAGGTTTGGACCCATTTTGCCTTTAAAACTGCCTTAATCTTTCTTGGCAGAGATTCAAGAAGCTATTGGAGCTAATCCTCAGAGATTTTGGTCCATAGGGATTTGAAAGCATCACGCAGTTGCTTCAGATTAAATAAAGCTTCAGATTAATAAATTGGCTGGTGAGTGTATATATCAATTAAACAAGTGTTGTCTTGTTGATAATAATAAACGAAAACTTTCAAAACAGACAAAAATTCTTACTGACCCTGAACTTTTTGGTAGCGAACATGAGAAATTTACTGGACCTCAATAAGTGTTTGAAATAGTGTTAAATTACATGAAAAAAAAAAATAAAAACAATAAAACATGACATTTGGATGAAACATTACAGGCGTCTTTTATGGAGAATAACTTTACAAATGGAATCACAGTTAGACTAGGGGGATGTTTAATTAACATGCAAATTGTCATTTTAGAGTTCTTGTTGTGCTTTTAATATGCATTATAAAGTTTAGTTTTGTGGTGTCTTTTTCTCATTTGTTATGTCGCAG
Seq C2 exon
CAACTGTACACTGACGTGGCCACAGGTGAGCTCCACGATGACCTCAGAGATGATGTCATCGAACTGGAGCAGCTCATCACAGAAATCCAGGATTTGAGCGCACAGCTGCGCAGCCAATGACAAGCCAGATCATTATCTGCTATTCCTCTCTTTGGTTACTTTAAATGTTGCACTTTTAACATCATGTATTAGACCAACAAAACCTCTGGAGATCCTGGAGAGTTCAGGACGTCTGTCACTTGTTTTTAAATCAACAGGGGAAATAAAACCTGGAAGAAGGACTTGATGTTTTTTTTTCCCCATTATGACCTGATCCAGGGTCAGTTGTCTATGCCTTAATCAGAGCTCCTGTAATCACAGTGTGTGGTTTTTAAGATCCCCGAGACTGGTATTGAAATTTCTTTGTACAAGAGTGCCTGTTAAATAAACAGTAAACATCTTTTTCTAACATATTTCATCCTTGCACTGGTTCTTTTTGTCGCATCTGATTAATCTGATTCCACACTTTAAATCAGGCTGGACTTTAATTGTCTGTCTGTGTTTTATTGTTCATTAGATAAAGAGAAAACCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918:ENSDART00000151999:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGACCACCAAAGCCAG
R:
GGCATAGACAACTGACCCTGG
Band lengths:
357-1952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]