BtaINT0155329 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25957254-25958640:+
Coord C1 exon
chr26:25957254-25957417
Coord A exon
chr26:25957418-25958400
Coord C2 exon
chr26:25958401-25958640
Length
983 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCACCTGCTTCCCCCACAGGCT
3' ss Score
11.47
Exon sequences
Seq C1 exon
TGCCTGGCTGAGCATGTGGACGCGCCACAGCTGGCCTCCAGCTTCGAGGCCACCATCAATAAATTTGATAAGAATTTCTCAGCTCACCTGCTCGACCTCCTGGCCCGGCTGAGCGTCTACAGCACCAGCGACTGCGAGCACGGCATGGCCAGTGTCATCTCCAG
Seq A exon
GTGGGCCCCCGCCGCGCCGAGTCCTCCCACTGCCCTGCGCCCTCCTGCCCCTTGAGCCGCAGGGACTGAGGCCACGTCCTTGGCCTCCGTGTGCTGGTGCTGATCCCCGTCACCTGCTGAAAGGAGGCCGTCTGGGTGTTCACACATGTGCGCGCGTCTGTGTGTGCACACATCCATCAGGGTGTGTTTGCGTGAGTGCTCACATGCGTGCACGCGTGGGCCAGCACGCGTGAGGCTGCTGCATCAGCACCTCCCCCAGCCCAGTTGGTCTGTGTTCCGAGGGCCAGGCCGGGGTCAGCTACACCAGCTGCTGCGCCCTGAGCCAGGACCAGACAAGGGAGGACCCTGTCTCCAGACAGGCAGTGAGGAGGTGCTGCCCTCCCCACGCCCCACCTGCCATGGTGAGTACGCGAGGTGGCCACGCCTCCAGGGCTGTGGCCGTGACGGTGCTCCCATGGGGTGCGCTGCCTGTGACCCCAGGAACGACGAGCAGCAGGCATGATGGGAACAGAAGTGTGGACCTGGGGGGGCCCGTGGGCCAAGCAGTGGGGTCTGTGGCTCTGGGCTAGCAGTTTCCGCTCCTCAGAGGGACATGGTGGGCCCGCTCATGCGGGGTTCAGTGAGTGAGGTCGGGGGAGGAGGGGCGGCCCTTGCTCTCGGAAACTCCGGTTGGGCGGCCTCCAGCTCAGCCGGATGCTGGGACCGCTCTGTTGCGCCCGAGGGCCCTGCCATCCCGGGGCCCAGGGTTCTGAGAGCTGTAGGGTCCCGGGGCTGGAGGCTCTTGTCTCCTCTTTGACCTGGGTGTTTTCTTGTGTCTTTAAGCTCTGCTCTCACTGGTGCTGGAGCAGGTGGTGCGTGGGCTGTGTGTGCGTGTGTGTGCACGTGTGCTGGTGATTCGCGTGCCCTGGGCCTCGCCGTGGGTGGTGAGGGGGTCGCCAGGGTGACTGAGGCCTCCTTGGGGACCCCACCTGCTTCCCCCACAG
Seq C2 exon
GCTGGACTTCAACGGCTTCTACACGGAGCGACTGGAGCGCCTATCTGCAGAAAGGAGCCAGAAGGTGGCACCCCCCGTGCCCGGCCCGCGGGGGCCTCCTGCCCCCGCGCCCAGGGTGGCCGTGCCCGCGCAGTGACGGTGCCCGGCTGTCCCGGCTGAGCCTCGGTGGGAGAGGCTCCACAGCGTCTCTGGAGCGCGTGTGCCGTGTGTTCTGCCCAAACATAAAGTTGACGCGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395:ENSBTAT00000008383:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCGAGGCCACCATCAATA
R:
ATGTTTGGGCAGAACACACGG
Band lengths:
347-1330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]