HsaINT0175393 @ hg19
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135093138-135094940:-
Coord C1 exon
chr10:135094777-135094940
Coord A exon
chr10:135093406-135094776
Coord C2 exon
chr10:135093138-135093405
Length
1371 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCCACTGTCCTTCCTCACAGGCT
3' ss Score
11.39
Exon sequences
Seq C1 exon
CACCTGGCTGAGCACGCAGACACTGTGCAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCAGCCCACCTGCTGGACCTCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCAGCGTCATCTCCAG
Seq A exon
GTGGGTGGGCGCCACCCCGGCTCAGCCCTTCCTCAGCTCAGTCCAGCGCCTGCCCCTGCCCAGCACCGCCCTGGCTCAGCCCTTCCTCAGCTCAGTCCAGCACCTGCCCCTGCCCAACACCGCCCTGGCCCAGTGCTGTCCCTGCTCAGCCGTCCCCCAGCTCAGCCCAGCACCTGCCCCTGCCCAGCACTGCCCTGGCCCAGTGCTGCCCCGGCTCAGCCTTCCCCCAGCTCAGCCCAGCACCTGCCCCTGCCCAGCACCGCCCTGGCTCAGCCCTTCCTCAGCTCAGTCCAGCACCTGCCCCTGCCCAACACCGCCCTGGCCCAGTGCTGTCCCGGCTCAGCCTTCCCCCAGCTCAGCCCAGCGCCTGCCCCTGCCCAGCACCGCCCTGGCCCAGTGCTGCCCCGGCTCAGCCTTCCCCCAGCTCAGCCCAGCGCCTGCCCCGGCTCAGCCCTTCCTCAGCTCAGCCCAGCATCTGCCCCAGCCCAGCGCCACCCCAGCTCAGCACCTGTCCCTGCATCCAGGCCCCATCTCCCCTGCACCCTCCCCTGGTCCACCTGGTGTAGCCTCCTTCAGAAGGTGGGGCAGGTCTGTGTCCTGGTGCTAGTGCTGGTCATATGCCACTCCCTGAAGTCAGGCTAGCCCAGCTCTCCCTGGGGTGTGACATTCTGTGCAACTGGGCTGCCCCATTGGCACCCTGCGGCTGTGTGTGTCCTGTGGGGCTGATCAGGCCTGGGTCAGCTTCCCTCATGCTGCACTAACACCTAGCCTGGGGGAAAGGGCCAGGTGGCCAAACTGCCAGCCTGGAAGGGGTGGTGCCCTTGGGGGTGCTGTCCTTGGGAAGGTGCCTATTTGTGCTTTTGGACCACCCTGTGCCCTGTGCCCCCCACAAATGTTCTGATTTTCTGAGCAGGGATTTCTGAGGCCACCCTGCATTGAGAACCACTGCTTGGTTCTCCAAGCCCCTGACACCTCAGGCCCCATTGCTAGGCCCTGTTGGGGTGATGGGAGCCCCAACTTTCTGGGGCCAGGAGAGAAGAAACCTGTGTTTGTGCCTTTGAGCAGGACTGAACAGGACTGAAAACCTTCCTGTGGAAACATTAGTTAGGAGCGTGCCTCACCCTCACCCCTGCAGGGCCTCTTATGGTCTCTGTAGCTGAACACTTCCCCATGGTAGGAGCAGGGCTGCTCAGGACGGACCCGCAGAAGGAGTGTGTGCCCCAGCTCCACTGTCCTTCCTCACCCCTGCTGCCCAGCACGCACCCGCAGAAGGGGTGTGCACCCTAGCTGCACCGTCCTTCCACACCCCTGCTGCCCAGCATGCACCCGCAGAAGGGGTGTGCACCCCAGCTCCACTGTCCTTCCTCACAG
Seq C2 exon
GCTTGACTTCAATGGTTTCTACACGGAGCGCCTGGAGCGCCTGTCTGCAGAGAGGAGCCAGAAGGCCACCCCCCAAGTGCCTGTCCTGCGGGGGCCCCCGGCTCCTGCACCCAGGGTCGCAGTCACCGCACAGTGAGCCCTGGCTGTGACAGGAAGGAAGGGTGTGGGGTCAGCAGGGACTGGTGCAAATGGGTCCAGAATTTTCAAATCGAATGCTCTGTGTTCTGTCTTTGCAGTTTAAATATAAAGCAGGAATGATTGACTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-TUBGCP2:NM_006659:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGGCCACCATCAACAAG
R:
TGCAAAGACAGAACACAGAGCA
Band lengths:
357-1728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)