GgaINT0044559 @ galGal4
Intron Retention
Gene
ENSGALG00000003526 | TUBGCP2
Description
gamma-tubulin complex component 2 [Source:RefSeq peptide;Acc:NP_001006496]
Coordinates
chr6:8879503-8882610:-
Coord C1 exon
chr6:8882447-8882610
Coord A exon
chr6:8879756-8882446
Coord C2 exon
chr6:8879503-8879755
Length
2691 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTGTGCTTCGTCCTACAGGTT
3' ss Score
11.6
Exon sequences
Seq C1 exon
CTTTTAGCAGAGCATGCTGACAACCTCCATTTGACATCTGGCTTTGAAGCAACGATCAACAAGTTTGATACTAATTTCTCAACGCATCTGCTGGATCTGTTGGACCGGCTAAGCATTTACAGCACCAATGACTGCGAGCACAGCATGCTTAACATCATCTACAG
Seq A exon
GTGAGCCAGGGGTTTTCTCTCAGTAGCTCAACTCAGCCCAGGAGCAGCGATTGCTGTTCTATAGCTGTGTGTGTCTGCCTCATGAGAGGAAAGACTGAAATTGCGGGAAATGTCACTTTGTGTTTCAGACCACGCCTTCAAAAATACTCTTTTGAATTATGTGAATTTTTTCTGTTCTAATGCACGTGTTAGTTCACATTGCTTTGTGAAGTATTCCAGCAGGAGATCGGGCTTTTGGATGTCACTGCAGGCAGTACTGGGCATGGCCAACATAGTGCTGACAGCCAAGTTGCCTGCTCTTTTCATAGAAGAGCATCGTGACCCACAGTCCTCAAGTCTCAGCAGGAACATGTGGAGATCCTTCTTTTGGTGGCATCACCCAGCTCAGTCCCAGGCTGGAGCTGGTCCTCACCTTGCTCAGAAATGCAGAACAATATCAAGTCCCTGACCATCCTTTCTATCAAGAAACAGAAATCCTGCAGCCTTCCATCACACTTTATCACACGTCATGCCAGAGATTACACCGATGGCTTTTCTGGCAGTAGCTCAGGTGTCCTCCCACCAGCACTGTTCCTAACTTAGCTGAGGTTCACCTCTTCTGTCATTGACTCTCCACCCTTTTGTAAACTGTTTATGGTTCCATAGGATGGTGGAAGCTCGCTCTTGTGGTGTTGCACCATGGAGACTGGTGTTGCATCCCATTTGATGCCATGTCCCTGGTGCCATGGCTGGGAGTTGACCCATGCAGATATTGTGCAGGCAGTGCTCCCAGAGGTTGCAGACTTGTTCTTCAGAAGTTCTTCCTGCTTCTGAAGAATAGAGAAGTATGGTGATTCAGCAGGATGTAAGAAAACAAAATGCTTCCGTTGTCTGTTTGCACTAAGGACGGTGACCTAAAACTGCATCAGGCTGTTTTCAGAGCAGGGTTTGAGGCCTCTGCCCCCAGGCACTTCTACATCCCGCTTCTGTAGAAGGGCTGAAGAAGAAATACTGTGTCTTAATGCTGCCAGGGCATGCGTCACTGCCATGTCTCCCAGTCAGGACTGCGTAGGACCATGCAAATCTTCACCGAGGTTTTCGGCACGGATGGACCTTGAGTTAAAAAGCAGGTGTCCCCGTTTCCTCATCTGAAATACTGTATGTTAGCAGGACACACAGCAGGACTGGGTGATCCTGTGGGTCTTTTCCAACCTTGGCGATTCTATGATTCTGTGATTCCATTTCCAAGGGCTGCTCAATAGCAGTAAGAAGCGGAAGCACCGAGGCGAATGGCCAGACATGACATTTAGCTCTTAGTCTGCAGGAGTTATCAGATCCAGTCTTGGACACTACGGCAACAGGAACCCAGGAACCAGAATGAAGACGGTTGCCGTCTAAAATAACGTACTTGAGAGAGAGGATAGACTGTAGGATATGCTGATCTTCTCTTACGAACTATAACCACAGATCTTCAGCATGCTGAGGGTGCTTGGGTGTCTTGGCTTCATCAGCAGCGCTGACAGAGCTGGTGGCTGCAGAAAGTGCCCACAATCACTGCCCAGTTGGGAAAAGGAGCAGCATCAGAGCAGAGGGGACTATCAGGTGGATGACTTTGAATCCAAATGCCCTAAAATCTTCACTGATTAAGTGCTGCTAGCACTCATCCTTTCACAAATTTGGAAGCAACAGGAAGGCTGAGCTTGGAGGAGGACCACTGGGATGTACAGAGCCACAGAACGAGATACTGAGTGTGAGTGGGGTTTGGGAAGCACCACACACTTAGGAGTTATCAAAGATAATTTAATCCTAAAAGCACAGTTGGAAAGGAACAGGATGTAAATGAGTCCTGACTGTGTAAGCCCTTAAGTTGGAATCAAAATTCAGTAAATAATCCTGCCTCAGTGTCACGTGTCCTTTGTGTAACATTTAAAGGACAAAAGGGATGTAAGCTGCTCAGCCAGGAGAAGGCAGCTGATAAATCCCATCTGTCGAGGCTGTTTTCCACAGTCACAAAAAATATCAAGGAACAATTTGTTGCCATTTCTGTAAGATTGTTAAGCAACACGAAACTCAAATGTTGTGCCCATTCCTTAAGTATTGGAACAACCTATTTGACAGATGAGGAGAGTAATTTCTGTGTGATGTTCAGGCTGCTGGCCCCTGCCAATTGGTGCTGCGAGGGTGCACCTTTCTCATAGGATCACACAATGGCTCGACTTGGAAGGGACCTCCAAAATCATCTAGTTCCACTCCTGCTGCTGTGAGAAGGGTTGCCAAGCATTGGATCAGGCTGCACAGGGCCCCATCCAGCCTGGCCTCAAAGCCACCAGCCTCTTTGGGTAGCCTATGCCAGGGCCTCTCTGCCCTCTGAGTAAAGAATTTGTTCCTTACCTAAACCTCCCCCTCTTCCAGTTTAGATCAATTCCCCCTTGTCCTATCACTGCCTGTCTGCCTGCTTGTAAGCTCCTTTCAAGCATTGGAAGAAATACTCTGAGTTGTATGGCTTTGTGTTGCAGAGATGTGCCTGGGGGAAGGCTGCAGCGGAGCGGGGCTGGGTGGTTCTGTGCAGTTCTGTGCCACCTGAGGCACTGCCTGGGTTACAGAGGAGATAGGCTGATGCTATCGGGAGGTGCCGCATGCTGCAGCAGCGTGGTGACCCTCTTGGGGCCACAGGGCAAGCAAGTCGACTCCTTCCTGTGCTTCGTCCTACAG
Seq C2 exon
GTTGGACTTCAATGGGTTCTACACGGAGCGCCTGGAGCACATGTCTGCAGAGCGGAGCCAAAGGGCAGCCCCACCACCCCCCTGTGCCGCCGCGCCGACCCCATGAAGGAGATGGGGGAGCATTGGAACCTCTGGAATGAGCGTGATGGGATCTGCTCTTCTGAGAGGCTTTTGTGAAGTCTTTTTTTTTTTTTCTTTTTTTTTTTTAACTCCATTGTAAAATGATGTCTTAATGTGTTGTAAAATAAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526:ENSGALT00000040987:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]