RnoINT0158284 @ rn6
Intron Retention
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212333741-212334716:-
Coord C1 exon
chr1:212334553-212334716
Coord A exon
chr1:212333953-212334552
Coord C2 exon
chr1:212333741-212333952
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCCTTTTCCCTCCTCTTAAGGCT
3' ss Score
8.92
Exon sequences
Seq C1 exon
CACCTGCCTGAGCATGTGGACACTCCTCAGCTGTCCTCCGGCTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTGGCCCGACTAAGTGTCTACAGCACCAGTGACTGTGAACACGGCATGGCCAGTGTCATCTCCAG
Seq A exon
GTAGGTAACACTTCCTGACTTTACAGCCCAGCCCTGCGGTCTGCTTTCACCACCACCCTGTTCTCCAGAGCCTCAGCATCAGGCGCCCATTGGGCAAAGGCTATGGCAGGAGGGGGCCAGCTGTGAATACTCTGGTTGGGGGGTGTTTGCTTACCACTGGGATAGGGTGGGACTCTGGCTTCATCCAGGAATTCGATAGCATTCCTGAATGGTCCTTTGAAAAGCACTAGTTTATACACTGGGACCATTTGGTGTCCTTTGCCACCCTGTAATGCCCTCCTTTCTGAGGTCTCTAGCACTGAAAATCTCGGCCAGGCTTCCCAAGCCTGGGCCACCCTCAGACTCCCATTGCCAGGAGACTCTGGGTAATGAGGACCCTAACCAATGGCGCACAATTAGACCCACTGGGATTGAGACCTGCTAGTGTGCCCATGCACTGTCAGGTGAGCATGCCCCTCCCTCTGCCCAGAAGAGGCCCTGGGGTCTATCTGTCACTGACCCGTTGCCACATGGAGAAATCATTGTAGATCCAATGTATCTTCTCAGCCTGGACAAGCTTCTGCCTGGAGTTTTTCTAACACCCTTTTCCCTCCTCTTAAG
Seq C2 exon
GCTAGATTTCAATGGTTTCTATGCGGAACGCCTGGAACGTCTGTCTGCAGAAAGGAGTCAGAAAGCTGCCCCCCAAGTGCCTGTCCCAAGGGGACCCCCAGCACCAGCATCCAGGGTGGCCATTCCTGCTCAATGAGCTTACTTGTTAAATATCATATTTCTGGAACCTGGGTGTTATACGTTATTACTGCTTAAATATGGTATGAGTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137:ENSRNOT00000024573:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGCATGTGGACACTC
R:
AACGTATAACACCCAGGTTCCA
Band lengths:
342-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]