DreINT0169793 @ danRer10
Intron Retention
Gene
ENSDARG00000013079 | tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
Coordinates
chr12:9175928-9180415:+
Coord C1 exon
chr12:9175928-9176091
Coord A exon
chr12:9176092-9180142
Coord C2 exon
chr12:9180143-9180415
Length
4051 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AATGAGATTTCTTTTTATAGGCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
TTTCTAGCTGAGCATGTGGATGCTCTTCAGTCTGACTCCGGGTTCGAGGGGACCATCAGCAAGTTTGACAGTAACTTCAGCACTTTATTGCTGGATCTTTTGGACAAGCTCAGCATTTACAGCACCAATGACTGTGAACACAGCATGATCAACATCATCTACAG
Seq A exon
GTGGGTCGCCAGAGAAACTTATCTACACTTCTTCTTTTTGTAACATCTATCAGATTTAAAGGATTAGTTCAACCCCAAAAAGAGAGAAAATTCTGTTTTAAATTACCTTCATATCATTCTAATTCCATGAGACATTTATTTATCTTCAGAACACAAATTGAGATATTTTAAATGAAATCTGAGAGTTCTCTGACCCTCCATAGACCGCAACAGTCACAAGTCAAGAAAAGGAACCAAAGCATTGTCAAAATGTTGTCTGAAAGCTCCAAGAGCACATCTGTGTGTCAAAAATCTGATGCTGTGCTTATTCATACAACATGATTTTTTTTTTTACTTTTGTATTTGTAATTTAGCCAACATTATCAATTAAAATGTATTTAAGTATACAGATTCCAAAGCTTTTCCAGGTCTGGAAATTCCCATTTGAAAATTCTATAACTTTTTCCAGGTTTTTATGGCGGTATGAACCCTTAGGGGCTGTTTACATATTGCGTCTTGCGAAATTGTCCAGTGTTTGTTATTTCCAATGGAGGCACTGGCCTCGTGTGTGCCAAAAGGTAGTGATCTGCTCATATTTTCCAGGCGCACCTAGTTGAAAAAATCTCAACTTTTCAGAGTGAAGTTTATTTATAAACTAATTTCGAGAGGATCTTGTGCTTATAATTGTTTGCACCCGGCCCTGCATTATTCAATTTATGATTGTAACGACAGGGTGGAGTGACAGATACAACTTGAGGTAAGATCCAATATGCAGGTTTATTCAGCGTCAGGCAAGCAGTGGTCATACAGGTGCAAACGGGTATATGTGGACAATCCAGAATCGTAATCACAGTACAGGCAATAGGTCGTAAGGCAGGCGGCTAAACAGGGATACAAGGCTAAGGTCTAACACGGAGAAACAAGACAAGGAAACGTGTTGTAAAGTCACACTAGTGTAAACAAGACTCGGCAACCAGGGTGAGTGAATGAGAGGTTTATGTATGGCATGTTATCAGTCTATGACAGGGTTCAGCTGCTGAGTGCAATCAAGCAGATGAATGAGCATGGGTGTCTGAGAGCAGTGCATGTATGAAAATGTAGTCCTGGGAAATGCGGAAGTGTAGTCCTGGTGTTCGTGTGAGAACCAGCGATCTCTGGAAAGCGATCGCTGGTTGTGTGACAATGATTCACCGATTCCTTAGCCACTATAAATACCCTAAGTTCCATATGACAGCCGTCTTCATTTTGAAGAAACCCCCCTTCCACCCCTACTCCTTCTCCTTTCCTAGATGGGTGGCACGGTGGCCCAGTGGTTAGCACTGTTGCCTCACAGCAAAAAAGTCACTGGTTCTAGTTCTTACCAAGCCAGCCAACGTTTCTGTGCGGAGTTTACACGTTTTCCCCGGCCTCACGTGGGTTTTCCCCTGATTCCTCCCACCGTCCAAAAACATGCAACTTAATTTAATTGACTAATCCAAATCACGCGCCATAATCATGCTGTAAGTAGTTATCTCTTAAGAGCAGTTACCATCTGTTCATTAACTACTACAGCAGGGGAGTTCTCGAGATCTACCTGAGCTTAAACTCCCCTCTCGCCTTGCAAATAGGAGGGAGCCCCGGGCTCAAGGATCTTATGAGCTCAGGGCTCTCTTCCGGACAGCATGCCAAACAAGCTTTATAATCAATCATCAGCTAAGTGTGAATTCTTGAAATGCCACAAAGGGCACCACGAGTCATGTGACTAGTACTAACCAATCAGCTTCATACTTGTATGGAATATACACATTTCAGTAATAACGGTAGACTAATTACCTCAGATGCACCCAATGACTGCAGTGCTTTTTCTTTTTCTCTATAGATAAAACTTGTATCAGAGCTGCAGCAATGATTTGTCAGTTTGTCATTCTTTGAGGCCCCGTTCACACTAATACGTTTTAGTTTTAAAATGCATAAGTTTTGCTGCGGTTACGCCATCAGTCCATACAAATCCGGGGTTCTTGAGCGCCAAAAACTGAGCTTTTTGGAAACGCTAGAGAGGCCATTTTCATTCTAAAATGCTGCTGCTCCATCTCATTGTGGATGGGGGAAAACCGAGACATCTGAAAACAGAGGCCTGGCTGCAAACGTTCGACTATCCAATTGGGGCTTTGGCAAGTTTGATATGGAAAATAATATAAGAAATAATATGCCAAAATTAAGTGGGTTTTTCCTTAAAATAAGCACAATAATCTGCCAATGGGGTAAGCAAAATAATCTTACATCAGAAGGACAAACCAGATTATTTTGCCTGCCCTATTGGCAGATTATTTTGCATGTTTCAAGGAAAAACTCACTTAATTTTAGCATATTATTTCTTAAAACGACAATATGTTTTGCTTGCCTAGAAAATGCTTCTTGATATAAGAATTTTTAGATATGTGGACTAGAAATGTGCACCTTGATCTATTGCAAGAGACACAAAGTGCCTTTTACCTTTTTTTGTGGCACACAAAAGCGTTCTTGGAGCTTTCAGACAAAGTTTTGACAATGTTTTTGGTTTCTTTTCTCGACTTTTCTCGATCATTGCTGTCTATAACGGGTCAGAGGACTCAGATTCCATCTAATGGCCCGTTTCCACTGAGTGGTATGGTACTGGTCGTTTCCACCGTCAAAAAGCGTACCGAACCAAACCGTATCATACCACTTATTCGGCACCCTTTCCAAAGGGTACCAAAAACGAGAAAGGGTACCAAAAGGTGGAGCTACACGCGCAGCTGAACGCTGATTGGTTACAGAGATACGTCACAAGCTCGTGGAGCTAGACAGAATGTAAACAAAGGATCCGCCATGTTCTAATACACTGCCGAGAGATTACATGGAAATACTATATGCATTAATAACAAGCCATGGATGACCCGAGCTCAAACAAACCTTGTCGTCGTCTTGATGAACAGACACAAAGCCAAGAAGAAAAATCTGCCGTGTGCTGTTGTTGCTTTACGAGCTCGTCTAAAAGTGCGAGCGATATTCGCTTTCTTCCGGGAGCTCACGATTCCTTCTATATTTGATATAATGAACTTCTTGAGCTGATGATAATAACGTGTGCGTGATTATTGAAGTGTCTCCGTCATCTGATTTATTCAGAAAGAAAAGGACAAGCGAGAGAGTAAAGCGCGGAAAAAAAGAAGCGCGGAAAAAAAGAAGCCGGGAAAACACAGGAGCAAAAGTGTTTTAGCAACCTGAATCATGAACAAACTGCCATGTTTATCTTCGTCTTTTGGACTATTATAAACTGGGAATGACAAAATGACTCTCTAACAGAGCTTACATGTGCTGGTGTAGATTACAGACACAGATGAGAAGTTTGCACTGACTGGGCTATATTGCGTGTGTTTTTAAACTCAAATAAGTACTAAATGTATGATGTGTGTAGTTTTTCTGTAATTAATAATATATCAGAGACTGTAAGGGTCAGTATGTGTACATATATGTTCATTTATTTATTTATTTTATTTTATATAATTACAGACGTTACAGTAGGCTATTTCGCACTGTCATTGATCTGCAGTTATAATCAAATCCTGTCCAAGTTAGCAATAAACATTTATAAAGAAGAATTTGTGAATAAAGTGTCTGTTTTGTGAGAAGTGCTACTCATATAATTTGTAAACGACCTGTACAGCTTTACTGTAGACATTTATTTGAGCGAGCATGATGTCGACTTAAACTTTGTCGTACACCACACTCACCAAAAGGGTACCCTTTGTGGTGGAAATGCAAGCCTGATAAAGGTGATCCGTACCGACCCAAACCGTACCATACTGTAGCAGTCAGTGGAAACGAGCCATAAAATATCTTAATTTGTGTTCTAAAGATGAACGAAGGTCTCAGGGGGTTGAAATAACATGAGGGTGAGTAATTAATAAGAGAAAAAAAATTCCATGAACTAATCCTTTAACCTGGCCTTACAAGTGACAAAAATATGTAGCACTAACCCATTAAATCTCTTGCTTTTGATGAGCTTATACAAGTCCTCATTTAAATTCAGTCTTCTCACCAGAGGTGCTGTGAATAATGAGATTTCTTTTTATAG
Seq C2 exon
GCTAGACTTCAATGGCTTTTACACTGAGAGACTGGAGCGCATGGCCATCGAAAGAAGCCAGAAGACGGTAGCGTAGCATTATCTATCAAAATATCCAGCTGTTTTATAGAGTTCTGTGTTGATTTGTTGCCTAATTTCCCCACTTAACTATATGTAATGCTATTATGTGGTGCTGTAACATGAAGCACTTTTCTGTTGGACATGCTTTTAATGGTCATGTATAAATTCCACAAATTCAAACTCAAATAAAAACTCAGTATAATAAAGTAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013079:ENSDART00000020192:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]