MmuINT0168167 @ mm9
Intron Retention
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:147181854-147182844:-
Coord C1 exon
chr7:147182681-147182844
Coord A exon
chr7:147182066-147182680
Coord C2 exon
chr7:147181854-147182065
Length
615 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCCATTTTCCTCCTCTAAAGACT
3' ss Score
5.85
Exon sequences
Seq C1 exon
CATCTGTCTGAGCATGTGGATGCTCCTCAGCTGGCCTCTGGTTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTGGCCCGACTAAGTGTCTACAGCACCAGTGACTGCGAACATGGCATGGCCAGTGTCATCTCCAG
Seq A exon
GTAAGTAACACTTCCTGATTCTAAAGCCCAGCCCTGCCATCTGCTCTCACCACTACCACTGCTCCCCATTGGCTCCAGCATCAGGCGCCCACATCTGGGCAAAGGCTGTGGAAGGGAGGGGCCAGCTGTGACCCCTCTGGTTGAGCGGCTGTTTGCTTAGCACTGGGATAGGAAGGAGCTCTGGCTTCATCCAGGAATGAGATACCATTCCTGAATTGTTCTTTGAAAAGTACTAGTTTGTACATTGGGACCATCTGGTGTCCTGTGCTACTCTGAGATGCTCTCACTTCTGAGGTCTCTAGCACAGAAAATCACAGCCAGGCTTCCCAAGCCTGGGCACCCTCAGACTCCCATTGCCAGGAGATGCTGGGTAATGAGAACCCTGACCAATGGCACACAATAAGGCCCACAGGGATCGAGACCTGCTCATGTATCCATGCACTGGCAGGTGGAGCATGCCCCTCCCTCTGCCTGGAAGAGGCCCTGGTTGAACCTGTCACATGATTGGGAGACGTGGGTTGGCACATGGATAACCATGGCAGATCCTGTGTATTTTCTCAGCTTGGGCTAGCTTCTGCCTGGAGTTTTTCTGACACCCATTTTCCTCCTCTAAAG
Seq C2 exon
ACTAGATTTCAATGGTTTCTATGCTGAACGCCTGGAACGTCTGTCTGCAGAAAGGAGTCAGAAGGCTGCCCCCCAAGTGCCTGTCCCACGGGGACCCTCAGCACCAGCACCCAGGGTGGCCATTCCTGCGCAATGAGCTCACTTGTTAAATATCATTATTTCTGGAACATGGCTGTTGTGCATTATTACTGCTTAAATATGGTTTGAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-Tubgcp2:NM_133755:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGTCTGAGCATGTGGATG
R:
ATGCACAACAGCCATGTTCCA
Band lengths:
347-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: