GgaINT0044559 @ galGal3
Intron Retention
Gene
ENSGALG00000003526 | Q5ZKY5_CHICK
Description
NA
Coordinates
chr6:10462531-10465638:-
Coord C1 exon
chr6:10465475-10465638
Coord A exon
chr6:10462784-10465474
Coord C2 exon
chr6:10462531-10462783
Length
2691 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTGTGCTTCGTCCTACAGGTT
3' ss Score
11.6
Exon sequences
Seq C1 exon
CTTTTAGCAGAGCATGCTGACAACCTCCATTTGACATCTGGCTTTGAAGCAACGATCAACAAGTTTGATACTAATTTCTCAACGCATCTGCTGGATCTGTTGGACCGGCTAAGCATTTACAGCACCAATGACTGCGAGCACAGCATGCTTAACATCATCTACAG
Seq A exon
GTGAGCCAGGGGTTTTCTCTCAGTAGCTCAACTCAGCCCAGGAGCAGCGATTGCTGTTCTATAGCTGTGTGTGTCTGCCTCATGAGAGGAAAGACTGAAATTGCGGGAAATGTCACTTTGTGTTTCAGACCACGCCTTCAAAAATACTCTTTTGAATTATGTGAATTTTTTCTGTTCTAATGCACGTGTTAGTTCACATTGCTTTGTGAAGTATTCCAGCAGGAGATCGGGCTTTTGGATGTCACTGCAGGCAGTACTGGGCATGGCCAACATAGTGCTGACAGCCAAGTTGCCTGCTCTTTTCATAGAAGAGCATCGTGACCCACAGTCCTCAAGTCTCAGCAGGAACATGTGGAGATCCTTCTTTTGGTGGCATCACCCAGCTCAGTCCCAGGCTGGAGCTGGTCCTCACCTTGCTCAGAAATGCAGAACAATATCAAGTCCCTGACCATCCTTTCTATCAAGAAACAGAAATCCTGCAGCCTTCCATCACACTTTATCACACGTCATGCCAGAGATTACACCGATGGCTTTTCTGGCAGTAGCTCAGGTGTCCTCCCACCAGCACTGTTCCTAACTTAGCTGAGGTTCACCTCTTCTGTCATTGACTCTCCACCCTTTTGTAAACTGTTTATGGTTCCATAGGATGGTGGAAGCTCGCTCTTGTGGTGTTGCACCATGGAGACTGGTGTTGCATCCCATTTGATGCCATGTCCCTGGTGCCATGGCTGGGAGTTGACCCATGCAGATATTGTGCAGGCAGTGCTCCCAGAGGTTGCAGACTTGTTCTTCAGAAGTTCTTCCTGCTTCTGAAGAATAGAGAAGTATGGTGATTCAGCAGGATGTAAGAAAACAAAATGCTTCCGTTGTCTGTTTGCACTAAGGACGGTGACCTAAAACTGCATCAGGCTGTTTTCAGAGCAGGGTTTGAGGCCTCTGCCCCCAGGCACTTCTACATCCCGCTTCTGTAGAAGGGCTGAAGAAGAAATACTGTGTCTTAATGCTGCCAGGGCATGCGTCACTGCCATGTCTCCCAGTCAGGACTGCGTAGGACCATGCAAATCTTCACCGAGGTTTTCGGCACGGATGGACCTTGAGTTAAAAAGCAGGTGTCCCCGTTTCCTCATCTGAAATACTGTATGTTAGCAGGACACACAGCAGGACTGGGTGATCCTGTGGGTCTTTTCCAACCTTGGCGATTCTATGATTCTGTGATTCCATTTCCAAGGGCTGCTCAATAGCAGTAAGAAGCGGAAGCACCGAGGCGAATGGCCAGACATGACATTTAGCTCTTAGTCTGCAGGAGTTATCAGATCCAGTCTTGGACACTACGGCAACAGGAACCCAGGAACCAGAATGAAGACGGTTGCCGTCTAAAATAACGTACTTGAGAGAGAGGATAGACTGTAGGATATGCTGATCTTCTCTTACGAACTATAACCACAGATCTTCAGCATGCTGAGGGTGCTTGGGTGTCTTGGCTTCATCAGCAGCGCTGACAGAGCTGGTGGCTGCAGAAAGTGCCCACAATCACTGCCCAGTTGGGAAAAGGAGCAGCATCAGAGCAGAGGGGACTATCAGGTGGATGACTTTGAATCCAAATGCCCTAAAATCTTCACTGATTAAGTGCTGCTAGCACTCATCCTTTCACAAATTTGGAAGCAACAGGAAGGCTGAGCTTGGAGGAGGACCACTGGGATGTACAGAGCCACAGAACGAGATACTGAGTGTGAGTGGGGTTTGGGAAGCACCACACACTTAGGAGTTATCAAAGATAATTTAATCCTAAAAGCACAGTTGGAAAGGAACAGGATGTAAATGAGTCCTGACTGTGTAAGCCCTTAAGTTGGAATCAAAATTCAGTAAATAATCCTGCCTCAGTGTCACGTGTCCTTTGTGTAACATTTAAAGGACAAAAGGGATGTAAGCTGCTCAGCCAGGAGAAGGCAGCTGATAAATCCCATCTGTCGAGGCTGTTTTCCACAGTCACAAAAAATATCAAGGAACAATTTGTTGCCATTTCTGTAAGATTGTTAAGCAACACGAAACTCAAATGTTGTGCCCATTCCTTAAGTATTGGAACAACCTATTTGACAGATGAGGAGAGTAATTTCTGTGTGATGTTCAGGCTGCTGGCCCCTGCCAATTGGTGCTGCGAGGGTGCACCTTTCTCATAGGATCACACAATGGCTCGACTTGGAAGGGACCTCCAAAATCATCTAGTTCCACTCCTGCTGCTGTGAGAAGGGTTGCCAAGCATTGGATCAGGCTGCACAGGGCCCCATCCAGCCTGGCCTCAAAGCCACCAGCCTCTTTGGGTAGCCTATGCCAGGGCCTCTCTGCCCTCTGAGTAAAGAATTTGTTCCTTACCTAAACCTCCCCCTCTTCCAGTTTAGATCAATTCCCCCTTGTCCTATCACTGCCTGTCTGCCTGCTTGTAAGCTCCTTTCAAGCATTGGAAGAAATACTCTGAGTTGTATGGCTTTGTGTTGCAGAGATGTGCCTGGGGGAAGGCTGCAGCGGAGCGGGGCTGGGTGGTTCTGTGCAGTTCTGTGCCACCTGAGGCACTGCCTGGGTTACAGAGGAGATAGGCTGATGCTATCGGGAGGTGCCGCATGCTGCAGCAGCGTGGTGACCCTCTTGGGGCCACAGGGCAAGCAAGTCGACTCCTTCCTGTGCTTCGTCCTACAG
Seq C2 exon
GTTGGACTTCAATGGGTTCTACACGGAGCGCCTGGAGCACATGTCTGCAGAGCGGAGCCAAAGGGCAGCCCCACCACCCCCCTGTGCCGCCGCGCCGACCCCATGAAGGAGATGGGGGAGCATTGGAACCTCTGGAATGAGCGTGATGGGATCTGCTCTTTTGAGAGGCTTTTGTGAAGTCTTTTTTTTTTTTTCTTTTTTTTTTTTAACTCCATTGTAAAATGATGTCTTAATGTGTTGTAAAATAAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526:ENSGALT00000040987:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]