BtaINT0155974 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85050210-85053474:-
Coord C1 exon
chr6:85053380-85053474
Coord A exon
chr6:85052010-85053379
Coord C2 exon
chr6:85050210-85052009
Length
1370 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TCCTTGTTTATTTTTCTTAGAAT
3' ss Score
8
Exon sequences
Seq C1 exon
GAGAAGTATGGAATTGAGCCAACAATGGTGGTACAGGGAGTCAAAATGCTCTATGTTCCTATAGTGCCTGGTCATGCAAAAAGATTGAAGTTAAC
Seq A exon
GTAAGTACCAAACATTGTATGCAAGAGATTCTTAGAAATTGAAATATAAGTTGGATGTACACTAGAAAATTAAGTGTAGAGATTATTAAAGTTCAGATAAAAATACATGATTTACTCTTATCTAATGACAGAAATAAAGACAGTGAATGTACCAAGCTTCATAGGCTACCTTCCCAGTGAGATTTATAGGATTACAATATTCTTGTGAATTTATTGTAGTTCTGAGTCAGCTTTGAAACTAATGGGCTTAGAAACCTGATTTGATCATATACTAAGTAAAAGCAGATCCACCTCTTATGTGCAAGCACTGAGGATTAGGCTGGTGAAACTGAAGTATTAAAAAAAATGCCAATTGTTATTGTCATTCATTTATTCAGCATATTTTTTCGAAGAGTGCCTACTATATCCCAGGTACTTTTGTGAGCATTAGGGATACAGCAGTGAGTGAAGCAAAGTCCCTACCCTTCTTGAGGAGGGACATGAATATCAGATGGTGGTAAGTGCTATGGAAAAATAAAGCAGAATAAAGGTGTGTTAAATTGCTACAGTATATTAGTATGTTAGATAATCTTGGTAATCCCTCTGCCTGTCATATTTTGATTTGATAAGCTGACATTTGAGCAGAGAGAAAAAGGAAGGGAGGGAGCAAAATCAGCCAGTCTTTACAGTGGTCTGCAAGGCCCTAAAGTATCTGGTTCCCACTTACTCCTCTGAGTTCCTTTCATACTTCTCTGTCCTTGTTCACAATATTCCAGTTACAGTGAACTCCCTCCTTTTCCTTGAACATTCCATTCTCCAGCATGGGACCTTTGATCTAGTTTTTCCCTTTGCTTACAACTCTTTCTGAGATGGCCATCTGACTAACTCTCACCTCTGGTCTTTGCACTTCCTAAAGAGGCCCCTCTGAACCCCATCTAATACTATATCCTGTCCAATCTCCCAGCCTAGCACTCCTAATCCCCTTTATTCTGCTCTACTTGTTCCCTTTCTCATAACATTTGTCACTAATAATCACTATATTATCATCTCCCCCCACTAATAAGCTTCATTCACAAGAGCAGGAATCTGTATTTCCCATCTATATATTCATTTTTTAAAAGCATTGCTTACATTTTGGGTTTTTTTGCTATGTGGTTTTTTTCGGGGGGGTGGTGTTTTTTAATAAGTGGTCTGTATTCTTTATCATTACCAACAGAGGTAAAAATTGTTAGGTAAATCATTCATTTCCTTAATTATATGAAAGCAGATGAATTACTACATTTAAAAGTAAATTTAAACAAGATCAGATTCTTTGGACAACATAATCATTGAATCACTCTTTTAATTTTACAGACTTTACCAAATTATTTGTCCTTGTTTATTTTTCTTAG
Seq C2 exon
AATGCATAAACTTGTGAAACCTTCTGCTGAAAAGAGATATGTGGATCTTACTGTGTCATTTGCTCCAGATGTTGATGGAGACGAAGATTTACCTGGACCTCCAGTAAGATACTACTTTAGTCATGACACTGATGAACAGAAGTTGTCTTAAATTTAAGACTACTTGATTTTGGAAAGAATGCACTTAATTCAGGAACTAAAAAAGTCAGCTCAAAATGCTATGGATTTCTCTTTGATAAAGCCTTAATTTAAGGGAACCATCAGTAAAAAAAAAGGAAGTACAGTGAAGAATTGTAAAGGATTTTGAAGCATAGTATATACACTCATGTTGTGCTTCATATGTGGATGTGATCACAAGCAACTTTGAACTGGAATGCCATTTTATAATGCTTACCAAAAAATTGTATATTGACTTCTTTGGATGAAACGAAGGAAAAATTACATACCCAAGACTAGAAGAGCTAAAACATCAAGAAATTGAAAGTTACAAATGTAATTATCCAAAACATTTAATCTCATTTTATAAATTGTTGTTGTTGTTGTTTAGTATTTGAGGCCCATTTTTCTCTTCAAATAGTATTTGGCTCCCTGCACCTTTCAAGATGAGGCTTTGAATTTAACATCAATGGAGGTGGGGGGATAGTAGCAGTGGATAAAGAGTAGACATTTAGAATTGTACAAATGTTACCTCTGCTCATTTTACCAGAGTTTGCTATATCACTGTCTCTCCAAAATCAGGATCTTTGTTGACAGCATCAGTGTCATAAGTCATGATGACAGGTGTTAACCGGAACTAAATGTTAACAATACTGTATGAACTCTTGACAGCCCTCTTAGAGAATCCACAAATGCAAACAGATAAATATGGTTGGTCATTTGATTCATCAGTATGCCTTCTAATGTGGCTGTTTTATTTATTTGGAACTCTAAACCTAACTGTCATAGTATATAAGACTAAAAAGTTTTGTAAATGGAGTGTCCTTAGAAGTTGAAGAGTAGAAATTAAAAAATTATCACTAGTTGAGTCTTGATTTTTTTTTTCTTCCAGCAAACAAATGGACAGAAAAACAATTTTTTTTTTTTTTTAAAGGAAATGTATTATTTAATTCCACATTCCCAGAAAGGGAGTTGACAAAGATAAAAATTTATTTTTTTAGATCTTTATTGATAGAAACGTTCTGTTTTCTGCTAGGAGCTATTGCAGGTATTCATAGAAATGCTTTCATTAAAATAACATAAAGTATACTCAACACTGTAAACTCAGTGAAAACAGCAGGTGTTTCATTTACTTCCAGTGATATGTGTCCTAAAGCAATTGGCATTTCGTAACCACAGAATGTCATTTCCTTCTAGCTGCTTTTCCTCTATTTTTCTGTTCAGACCATTAATAAGTACTTTGATAAATTAAAAACTGATTCACATCAGTATTAATACAATTTGATATCTTTTTCTATTCCCTCCTTAACTTTCCTTTTATTCCATTTGTATATAGTTTAGTCAACCAGGCATATTGTTTCATTCTTTTGTAAAAGCATCATCCCATGGAGGAATGGAGGTTGAGTTTGTATGATTAAAGGGTAATCTGCATTGGAGGCAAGGATAAGTGGACAGGATGAGTCTACAGGAACTGACTACCTTTGAAATAAGCAATTAATTTTGGTTCATCATATCCTTCCCTCTCACTTCATGTATATTGCAAACACAGTGCTTAAAATTAATATTACTTAAAAGTGAATTCAGGAATATCAAAGCTCTGTGGCTTGGAACATTAGAGGCTAGCACTAATAAAAGAACTTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837:ENSBTAT00000008985:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.2=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(28.5=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCTGGTCATGCAAAAAGA
R:
GCTTCAAAATCCTTTACAATTCTTCA
Band lengths:
343-1713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]