GgaINT0070367 @ galGal3
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53129233-53132446:-
Coord C1 exon
chr4:53132352-53132446
Coord A exon
chr4:53129620-53132351
Coord C2 exon
chr4:53129233-53129619
Length
2732 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
TGTTCTTCATTTCCTTGTAGGAT
3' ss Score
10.69
Exon sequences
Seq C1 exon
GAGAAATATGGAATTGAACCAACTATGGTTGTACAGGGAGTCAAAATGCTGTATGTTCCTGTGATGCCAGGTCACATTAAAAGATTAAAGCTGAC
Seq A exon
GTAAGTATAACTGGAAAATAGATCTAGATAAGTGAGTGCATGTACAAATTACGTTGACTGGAATATGCCAAGATTGTGGGTCTGACAGCAGTGTTTTCTCCCCCAGCATTTGCTAGTCATTTATATTTGGGAATTGAAAGAGGGTAATTATTTGGGGGGCGGAGGGAGAAGGTAAATTAACTTCTGTGTTGAGGACAGGAGATTTGCAAAATGCTGCTCTAACTGATGAATGCCAGCATGAGAAGCCAAAGAAGTCTGACAGTTTTGGAGAGAAATAATATGCTTTGGTTTTATCAGAAAAGGACAAACTGATACTTTTTAATCAGGCTTAAAACTCATGGTGATATTTATCAACTTAGTTCAGGAAGCAGGAGAAGACATTCAGGAAGGAATGAACGTGCTGGTTGCAGATTGAGATTTATGGTAGTCTGTTCAAGTTTGTGGCAATTCCTTCAGGTTGTAGCTCACTTTAGCCCTTTTAAAACAGAAGAAGTTTGCAAGGCTTTGTGGTGATGAGTCCTGATAAGAAATCAGGACACATCAAACTGGAAGGTATGAGGGCAGAACATTATTTTTTGATTGCTAGGCCTTTGCAAAAGGGTAGCTAGATCCGATCCAACACACCTTATATGTTGATAGAACTTTGCTAGCTCAAAATTTGTCCATCACAGCTCTTCTGGAGTGTATGCTGGTCAGTGCTCCCAGACATTGCTGCAGTAAATAGTTGCATTGATCAGTTGTCTGCTAGTCATCTACTTGAGAGGAAGTAGTATACACGTGAGCAAAGGGATGACTTTGAAGGGGAGAAGAGTCCTAAGCTGGTGCTACCTTTAGGGTGCCTGGCATACAGCCTACCTCAGAATAAATTGCTTATATTCCTTCTTATATGGCTGTAATTTTGATTGAGTGGAGTGTACAATAAAGTCAAAGGCATGGTTTGAAGCTGCCTTTTGTCAGAACATTAAGAATTTCTGTTAACCCCCAGACATTATTCAAGCTTTCTGTGTAATTACAGCTTTTTTGGGGTGCTGTTACAAACAGTCCCAAAAGCTTTCTAAGATGTATATAGCAAACTCTGGTCTTGTTTGTGTTGTTTGTGTGTTGTTTTTTGTTGTAGTTGTTTTTGAGATGCTTAAAATCTTTCTTCTTGGGTGGCTTATCCCTTGAAATTAATTTGAGGTCAGGTTGGATGGGGCTTAGAGCAACCTGATCTAGTGAAAGATGTCCTTGCCATGTGAGGAGTGGTTGGCTTAGATGGTCTTTCAAGGTCCCTTTCAACAAAAATGATCCTCTGATTCTGTAATATGACAGCAAGCATTACTAGACATCTCATTTCAGAATTTCAGCTTTCACTGGTAGCATAGTGTATGGAAACTGTTGAATCAGGGCCTGAAGCTCTGATTGACCACCTGGGGTAAGCACTGAGTCAGCCATGGGAGCACAGGTGAAGGCAATTCACCTGTGTGGCCAGAAGGGGTGGAGCCAGGCTGCACCTCTCCTAGACCTCATTTAAGGGCTGACTGCCATGGGGGAAAGGATCTCTTTCTGGAGATTGTGCCTCTTGGAGTATTTTTCAGCGATCCCGGGACACGGGTAAGCTTTCCATTCATCACCAATTATCCCTCTCTAATGCGATAATCTTTCCAGCCTAACTTGTCTATATACTTATTGATTATACATCTATATACTCACTGATCATACACATACTCCTTAGGAACAGATTTTAGAGGCATAGTTGTCACCTTGCTCTGTGACGTGAAATTTCCTCACGCAAATGTATGTGATGTTAATATCTCTGCTGAAAAGAGGCTAAGACTTTGTGTTCTTGCAAGGAAACAAGTACTTTGAGGATAGCAGCTTTCTGTCCTGCGTCCTAAAGTATAGCAAGAAGTGAATCCTTCTCTTGTGTCCTACGAGGAATAAAAATGAGTGTGTTCTTCAAGCCTGCTGTCATTTGAACTGGCCTTGTGAACTAGTGCTCCAAGGTAGCAAGAAAGTAGTTCTGAGATATCTAAAGATAGGTAATGAAAGTGAGATTGATTTAAGTATTTATTGTGAAACTTCACAGTGCTAGCTGTATCTTCTGAGGCTTATGTTGCAGTAATAAGACTACAGAGAGCAAAGAGGGGAAGTGGCACTGAAACGTCATGCTTACCTAGTTTAAACTCACTTTGTGGTCATTAAAGGAGGCGTCCTAGATGCTGGTTGCCTTTCCCCCTTCCTAGCTATTCATCTTTAGAATTCAATGACTTGAAAAGTCTTAATTTCAGCAGAATCACTTTCCATGAGAACTGCACATCGGATATTTGCATTGGAGTAGGTCTCCCTAATAAAGTCCTAAAGGCTGCCATTGTTGAGAGACCAAGAGTTTGATCCTACCTCCTGACCGGAATTCTGCACAGAAAACTCATTTTGTCTTGTATCTCAATAGGATGTCAAAGAGAAATTATGTGGGTGAGGAAACCTATCTGAAACTGCCCATCTTCTGTCATTGTTTGTACTGAGCACTTGTTAGTGAGCAATGTAATAGCTCACTAGCAGGCTGAGAACTTTGTCAGCAGTAGAATGCCATTTGCTGTTGCTGAAAGGAAGGAACAGCTTTTGTACTGACATTAAGAGAAGGCTCATGCTCCATTATTGTGGTTTCTGCTAATGAAATTAGTCCTTATTTGGCTCTGAATTCACACTGCAATTCCTTCTCTTATCTTAAACTGTTCTTCATTTCCTTGTAG
Seq C2 exon
GATGCAAAAGCTTGTGAAGCCATCAGCTGACAAAAAGTATGTGGACTTGACAGTATCATTTGCTCCAGAGACTGATGGAGATGAAGACTTGCCAGGGCCACCTGTGAGATACTACTTTGTTCAGGAAGACAATTGATGGTAGAGATACAGAAGTCACTCCAGGACCATTTGTTTTGAAAGGAGTGTGCTAATTTTCAGCTATTAAAGATGGTACTATATATTCTTTTTTTTTTTGGTGAAGCCTTAATTAAAAAATGATGGAAGTCAGTGGCTTTGCGCTGAAGACAAACTGGATTTGTTTCATCTGTTCCCATTATCTTCGAACTAGTTTGCTCAAAGGAGGATTGGTCACTCCACAAGATGGAATGTCCAGTACAGTCCTTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.2=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(28.5=76.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]