DreINT0022021 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19192826-19193452:+
Coord C1 exon
chr1:19192826-19192920
Coord A exon
chr1:19192921-19193044
Coord C2 exon
chr1:19193045-19193452
Length
124 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGG
5' ss Score
7.34
3' ss Seq
TGTTTCTCCTCTCCTTACAGAAT
3' ss Score
12.25
Exon sequences
Seq C1 exon
GAGAAATACGGGATTGAGCCCACCATGGTTGTTCATGGAGTGAAGATGCTGTATGTGCCAGTTATGCCAGGCCACAACAAAAGACTAAAACTAAC
Seq A exon
GTAAGGCTCAACAGAAAAATAAAAAATACGAACTGAAAAAAAGATTGCATACTTCCAGCTTCTGTTTCAAAATGTAACATAATGCATTTCTCCAACCATCTCCCTGTTTCTCCTCTCCTTACAG
Seq C2 exon
AATGCATAAACTGATCAAACCTTCATCAGGAAGGAAATATGTCGACCTGACCGTATCGTTTGCCCCTGAGGTGGATGGTGATGAAGATCTTCCCGGTCCTCCAGTGCGATATTACTTCAGTGGAGAAAATGAAAGCAGCGAGACAGCCTGACACACACACACATACAAAACTCAACAAACACTCTTCTCTCTTGCCCTGTGGACCACAAGTGAAGTAGCACTTGATCAGACTCAGTGTACATAGTGAATTTTTGTTTTCTACTGGTTTAATATTTTATTGCACAGCATTGCCTGTGCAGATGCCTTAAGATAATTCTATTGTACTTCAATGTGGCAACAATGACTAATATTAACGCTCTTAAGAGTAAAACTAAAAGAAAGTGTTTACACGACTTTCCCCAGGGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.2=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(28.5=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCCCACCATGGTTGTTC
R:
ATGTGTGTGTGTGTCAGGCTG
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]