BtaINT0157572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30774560-30776783:+
Coord C1 exon
chr6:30774560-30774709
Coord A exon
chr6:30774710-30776618
Coord C2 exon
chr6:30776619-30776783
Length
1909 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCCCTTTTCTGTGCTTCAGGAA
3' ss Score
11.38
Exon sequences
Seq C1 exon
GAAGTTTTGCAGCTCGAGCGACAGATGGGAGGACAGCTCCTAGAAGAACCTAAGGCTCTTCACTTTAAAGGCAGCACCCACAACCTGCGCCTATCCATTCACGATATTGCCCATTCCCTCTGGAAGAGCAAGTTACTGGCCAAATATCAG
Seq A exon
GTAAGGTTACCAAGATGAACTGAAGGCTTGAAGACATCTCCAAGAAAGAGAACTGGAATGATTTAGACAGAAGATATTCCATTCCTTGAAAGTAATCTTAACTTGGGTACTCCTCCAAAATAGTTTGGGGTTATTTAGGATTTTTGAAAAATCCTCTAGATGTACTAGAGGAAATGCTCTTTTCTCAATTCTTTCAGGTAAGTGTACTATCATTGTTTTACTTTCAATAAATAAGACTTCAAGTCCATCATTTCTATTTATTTCCAGAGTAACGTTAACACTGAGTTGATAAACTAGCCTCAAAAGCATTCATAGGAGAAAGAGAACATTGGTATCCCACATGACACAGATTAGGCTTCAGGCTGGCTAAGAGAGTGCCTTTACGTTAAAAACTTAGAGGAAACATCATCTTGGAAACTTGGAATAGCAAATAAAAATAAAACCTGGCCAGGATTTTATTAAATACTAGCATCAGAATACTGGTCCCCTCTGTATATAGCCGTATGAGGGGAAAGTAAGACTTTCTAGAGGTTTCTCACCTCCGCCTCCATCAGCCAGCCTGGGCTCTCAGGAGGCTGCAATGGGCTCCCTAGTCTCAGACCCAGTCCTGGGAGTCACAGACACACTTAGATAAGCAGCACACCCTTGTCTACATGCGTGCACATCCCGTCCCCCATCCGGGGCTGCATCTGCACTGGCTGTGATTTCCTGATGGAAGTCCATGAACACACTAGAAGGGATAAAGGGAAGATTTGCAGCTGCATCCTTACTCTCAGATGTCTGGTACTTCCATATAAATTGTGGGGGAAAAGCCTACTAGTTCACTAACAGTCTTGAGCTTTGATGGGGGCACATGCCAGACTCTTCTGTGTAAGTCAGTCCTTGATTGAGAGACTGGCTTTGACTTGCTCATTAAATCTATTCCTTCCTTTTCCTCTCTTCTCTGATTTTGCAACTGCCATAAATCTTCCCCCTTAATGAACAGTTTTTTTTTTTTGCAACTGTAAAGGAAAATACTGTTTTAATAATAATAATGATACTTCAAGCTAACTGGCTGAGTTCTCACCATCTGCCAGACTCTCATGTACTTTGATGAATGTCATTTAACCCCCTTCATGCAGGTTTTTCTTTGCTTATGCACAGGCTTCGCAGATGAGGAAACAGAAAAGGTTAAGCAGCTTGCCCCGAATCACCAAGTAAACAAGGGGAAGGCATCTCATTTGTATTTAATTTGGCTCCAAGCCTCTGCTCTTAACCAACATGGTCTCCCATTGTGTGTCAACCTTTTTTTCTTTTATTGAAAAAAAGATTCTAGGATGGGCTCTGTGAGGTGATCTAGATTCATAGGAAAGGATGCCTGTTAGAGGCTTGGTGATTTTTAGGCCAAGAGCTTTCATGTGGCAGCTAATCAAGCCTCCAGTTTGCAACTTGTAGTGAATCCTGGCTTTCCTCGTCCTGTGGAGGGCATGGGCATGAAAGGGAACTGGGTCAGTGCATCACCCTTTAGACTTCTTTGCTTTCCTCCATGGTACCCTGGCAGGGAGTTCTTTTCATGGGCAGTGATTGGAGGGGAGTGGGTTTTATTTGGGGAATTGTCTAAACCTTAAAAAAAAAAAAAAAAAAACACAATGGATTTTTTATAAATGACAGAAGTGGCAGGCTGGTTAGGTGTATGGGTTCTGGGGCCAAGTCCCTGGCTTTGGACCTCAGCTCTGCCACTTACTAGCTATGGGACTTTGGGTGAGTTATGTAAACATCTCTGGTCCTCAGTCTTTCCATCTGAAAAGGGAGTTGGAATATATTCATGCACAGACCCACAGTGAGGAGTAAAGAAGGCACCGCAATTCACATGTGTGGTACTGAGAGCACCGGGTCCCTCATTTGTGGTTCCCCCTTTTCTGTGCTTCAG
Seq C2 exon
GAAATTCCATTCTACCATGTCTGGAGTGGGTCTCAGAGAAACCTCCACTGCACGTTCACTCTGGAAAGATTCAGCCTGAACACAGTGGAGCTGGTCTGCAAACTGTGTGTGCGGCAAGTGGAGGGAGAAGGGCAGATCTTCCAGCTGAACTGCACCGTGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084:ENSBTAT00000039753:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTTTGCAGCTCGAGC
R:
CTCAGACACGGTGCAGTTCAG
Band lengths:
315-2224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]