DreINT0022139 @ danRer10
Intron Retention
Gene
ENSDARG00000099133 | UNC5C (2 of 2)
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr5:6967964-6969646:+
Coord C1 exon
chr5:6967964-6968078
Coord A exon
chr5:6968079-6969481
Coord C2 exon
chr5:6969482-6969646
Length
1403 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
ACCATATATTGTATGTGCAGGAG
3' ss Score
6.03
Exon sequences
Seq C1 exon
CAAACTGCTGGATGAACCAAAGTCTCTGAACTTCACTTATAGCAACCACAACTTGAGACTGTCAGTCCACGATATCCACTGCCAGTGGAGGAGCAAACTTCTGACCAAATACCAG
Seq A exon
GTACAACACAACACACTCACCACCTTCACTGAAGTAAACAGTATGAATATAAATATTAGTAGCAACATTCAGTGTTTTGTGTATTGTTCCATTCAATATAACTTAAGGTATTATTTAGGAAGTGTTTTTTTTTTTTTTAGAAAAGGATTGGAGGGTACTCAGTGTCCTGAAATACATTTTGTAAATTATTTTAATAGTTGAAATGCTTATATATTTTATATTAAATTATTTAACTCAATATTGATTTGTTCAAATTACGATATTTGTTATTATGTACAAAATTAATATTGATGTTGTCATTACAGGATTTTGTTATTAATAACATTTGAAAACTATTAGTTGTTAATTTTAGATATTATTATTATTATTATTATTATTATTTCTATTAATATTACTATTATTATTACTTCTATATTATTATTATTATTATTAATAATAATATCAAAGTAATAATAATAATAGTAATATTAATAATAATAATAATAATAATAATAATTTATTATTGTTGTTGTTGTTGTTGTTGTTGTTATTATTATTACTATTTCTATTATTATTTTTTTATTATTATATTACTTCGATTATTATTATTATTATTATTATTATTATTATTGTTATTATTATTATTATTATTACTTCTATTTTTTTCTATTATTAGTAGTAATATTATTATTATTATTATTTAATGTAACATTTAACATATATTATAACACTTTGCTGTTTTAGTAGTAGTAGCAAATGGCTTAGAATTAGCATGGATGGAGGGGACGTGTCCCCACCAATATCTACCAAATACTAAAATGTCCCTACCAATAATTTAATTGACTTCAAAATAAAATAATGCTCCATCAACCTTTAGTAATGTAAACGTGCAGAACGTGAAGTTCGTTTTAAGTTTAGATTTTTTTGATTATGAGAAACAATAATCGAAATAAAACAGGTAAATTGCCTTACACCTTCCAAATTTCTGGACATTCATACCTCCTCAAAGCCTGACTGCAGTAAAATCATGTAAATTGACTTTTGCTCCATGGGATGTGATTGATATTTGCATAATTACGTATTTATTTATATTATTAAGCACTTTATTCATGTTTTTAAAAGCGCAAAACTGTTTGAAAGCGCAGAATTTGTGCTGTTCAGTGTAGCTCTAGGGAAATACTGTATGTCCCCACCAATGTCAAGAGCAAATCTACGCCCTTGAGAAGTAGTAACAATTATGAACATGGGTGAAAGATATACAGTATTCAAATTTTGAAGTGAATCAAAAAAAAATTATTTTATAGTTCATAAATAAATAAATCAATATTAATACTGAATGGTTTTGTATTCAATACACATTTTGCTTTTAGGACTTCAAATGATCCACTTCAAATGTTGACAACTACCATATATTGTATGTGCAG
Seq C2 exon
GAGGTTCTGTTCTCTCAGGTGTGGAGCGGCTCGGTGCGGCGGCTGCACTGCTCTTTCACTCTGGAACGTCAGGCTCTGAGTGTGTGTGAGTTCTCCTGTAAACTCTGTGTGCGACAGGTTGAGGGAGAAGGCCAGATCTTCCAGCTCTACAGCACACTGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099133:ENSDART00000164862:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAACCAAAGTCTCTGAACT
R:
CACTCAGTGTGCTGTAGAGCTG
Band lengths:
270-1673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]