GgaINT0077570 @ galGal3
Intron Retention
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60177903-60178510:-
Coord C1 exon
chr4:60178361-60178510
Coord A exon
chr4:60178068-60178360
Coord C2 exon
chr4:60177903-60178067
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCTTTCTTTCCTCCTGCAGGAG
3' ss Score
12.94
Exon sequences
Seq C1 exon
GAGGTCCTCCAGCTTGAGCGGCAGATGGGTGGGCAGCTGTTGGAGGAACCCAAAACTTTGCATTTTAAGGGAAGTACCCACAACCTGCGCTTATCCATTCATGACATTGCCCACTCTCTCTGGAAGAGCAAACTGCTGGCTAAATACCAG
Seq A exon
GTGAGCATCACAAAACATTGGGTCCTAGAGGCTTAAAGAAATCCAGTGACACACTGTTTGAAGACAACCAGTTGCCAAGCTGTAGGAATGTGGACACTTTTTTTCTTGGACTATCTGCAATAGCAGTTGCATGGAGCTCGCAGTTTCCAGTCATATAGCATCAGTGCCCTGTTCCCACAAGGTGTTCTACTCCTCAGGGCCATGTGGATGCTGAGCCAGCTCTCAACTGAGAAGAGACTATGGAAAATAACTGATATTTATACTCTATTCCATTCCTTTCTTTCCTCCTGCAG
Seq C2 exon
GAGATTCCTTTTTACCACATCTGGAGCGGGTGCCAGAGGAACTTGCACTGCACCTTCACGCTGGAACGATTCAGTCTCAATACCCTGGAGCTCGTCTGCAAACTCTGTGTGCGGCAAGTCGAAGGAGAAGGGCAGATCTTCCAGCTGAACTGCTCAGTATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219:ENSGALT00000019955:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGCGGCAGATGGGTG
R:
CTGAGCAGTTCAGCTGGAAGA
Band lengths:
295-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]