RnoINT0160617 @ rn6
Intron Retention
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247379637-247381037:+
Coord C1 exon
chr2:247379637-247379786
Coord A exon
chr2:247379787-247380872
Coord C2 exon
chr2:247380873-247381037
Length
1086 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TACCACCCCATGTCTTCCAGGAA
3' ss Score
8.12
Exon sequences
Seq C1 exon
GAAGTTCTACAACTGGAAAGGCAAATGGGAGGACAGCTCCTAGAAGAACCCAAGGCTCTTCATTTTAAAGGCAGCATCCACAACCTGCGCCTCTCAATTCATGACATCACCCATTCCCTCTGGAAGAGCAAATTGCTGGCTAAGTATCAG
Seq A exon
GTGAGGCTACCAAGAGACACTAACTACGGAGAGGGATATAAGACAGATGATTGGGATGTTATAGTCATAGATGTCTCCTTTCTTGGAGACATTGCCAATGACTCCTGTGTCAACACTTATTTCTCCAAAACGGTATGGGCCCAGGGTTTGGAAAAATGCCCAATCAACCTACTTAAAGGAATGGTTTTTAAAGTATTCTTCTTATAATAACTGTACTACTGTTGTTTTAGTAAGTTAGTTTTCAACATTCACTGCATTAATAGGAACAGCGTCAAGGGCATCCAAGGGAGGCGATGGGACACTGCTACTTGATCTGACATGCATTGTTTTTCCATCTTGCTACCTCGCATAGTCCCTGGACTTTGCAGGGACCGTGGTTTGTTGGCTGTCATGGTACGTCAGTGAAAGGCACTGTTACTCACTGGTTCTGGATTTGGCACCAGAACCTTAACCTAAACAGCGTATTCATTCATGGGTCTTTTCCTTGGCTTAATTACCACAAGCATATAGGATTGGTTCTGTACAGTAATTTCAACAGTGACTAGTGAGTATCTTGTATGGGCTTCATGCCTCTCTGACTAAGGGCTGTTCTGTGAGTACTGATTTCCAACTGGAGTGAACTATAGCTGCCCCTGCCCTGGGCAAAGGCAGGGTAAAGGCATGAAAAGATATGGGTCATCACAACATCCTGTGCTAGCTTTGCTCTTCTCTAATACATCACACCAGGGATTCCTTTTAAGGAGAAATGATAGACTGTGCAAGATTTCCTTTAAGGTCTTTCTAAGCTTTCTAATCATCTCATCAACGATGGTTGCTTTTCCAAATGAGAGGCAGATACACTGGTTCAGTGTGGTTTCTAGAGTTGATTCCATGGGTTCCAGTCACCACCAATCAACTTCCTCACTGTTCTCTAGTAGCTGTTACTTAACCTCTCTGAATCTCTGTTTTCTTGTGTGAAGGGAGGTGAGACCATATTTGCACAGAGAGCAATCATGAAGTTTGATGAGGTGGAAAACTGAAAAGCTTCAGTATTTAATGGATACACTCAGCAGCTCTTGTTTATGGTTACCACCCCATGTCTTCCAG
Seq C2 exon
GAAATTCCATTTTACCACATCTGGAGTGGCTCTCAAAGAAACCTCCACTGTACCTTCACTCTGGAAAGACTCAGCCTAAACACAGTAGAGCTGGTTTGCAAACTCTGTGTGCGGCAGGTTGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGTACTGTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071:ENSRNOT00000050330:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAACTGGAAAGGCAAATGGG
R:
CTCTGACACAGTACAGTTGAGCT
Band lengths:
310-1396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]