HsaINT0177880 @ hg38
Intron Retention
Gene
ENSG00000182168 | UNC5C
Description
unc-5 netrin receptor C [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr4:95182897-95185196:-
Coord C1 exon
chr4:95185047-95185196
Coord A exon
chr4:95183062-95185046
Coord C2 exon
chr4:95182897-95183061
Length
1985 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AACACTTTCATATCCTTTAGGAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
GAAATTTTACATCTTGAGAGACAGATGGGAGGACAGCTCCTAGAAGAACCTAAGGCTCTTCATTTTAAAGGCAGCACCCACAACCTGCGCCTGTCAATTCACGATATCGCCCATTCCCTCTGGAAGAGCAAATTGCTGGCTAAATATCAG
Seq A exon
GTAAGGTTCCCAAGCCGAACAAAAGGTCTGGAGACATCTCTAAGAAAGAGGTCTAAAATTATATAGACATAGGAAATCCCCTTCCTTGAAATTAATCATATGTCATTACTTGTTTCTCCAAAATAGTTTGGGGTTATTTAGGATTTTTGAGAAACACAGACATATTTGAGGGAATGCTTTTTAAAAATTCTTCCTTTAAATAAATGTACTATCATTGTTTTATTTTTAATAAATGAAAGGCTTCCAAATCCATCATTTCAATTAATTTTCATACTAAATGTTCACATCAATGGGTAAAAACAGCTTGAAATGCATTCACAGAAACAAACAGAAGGACATTTTTATTCCATGGGACACAAATTAGGCTTCAGCCTTCCTAGGCCAGTACCCTTACATTGAAAAATTAGAGGGAGCCCTACTTTGGAGAACTGAAATAGCATGTAAAAGTAAAACCCAATCAGGATATTATTAAACAAGAGACAAGAAAATACTGGTCCCAAGTGTCATTTGTATATACCTGGGGGAAAATCACATGACCCTCAAGGAATTTTCCCCTCCTTCATCCGTCAGCCTGAGCTCTTGAGAAAACCACTTTGGCGGGATTGCAAGCCTCATATGCCATCCTAGGAGGGGCAGACATATTTAGAGAGCTGTGAATCCATGTTGATATTTATGCAAATTCAACCCAAACCCCAGCATTGCCTCTGAACTGGTAGCTATTTCCTGATGTAAGCCAATGAACATACTGGAAGACTGATGGGAAGACATTCTGGCTCCATTCTCACTCTCATTGGTCTAGTTCCTACACATAAATTATGGGAAACAAGCCTACTGGTTTGTTAACAATCATGAGCTTTGACGGAGGTTGCATGCCAGACTCTCTATGCACAGCTCAGTCCTTGATGGAGACAGAAGGCTTCTGACTTACTCAGTATACCTCTTTCTTTGCTTTCTTCTTTCCTCTGTGTTGCAGTTGTCATAAAATACTATAAATCTCCCTGTTTTAGGAGTAATTTCTTTTATACAATTATAAGAAAATACTATTTTAATGATAATGATAATATGATATTAGTTAAAGCTAAGCCTGGCCGAATGCTTACCATCTGCTGGACACTCTCTTCATACATTGGTTTAGCTCATTTAACCCCAGCAGACCTACGAATGAGAAGCTCTTTGTTTACTCTTTTGCAGATAGGAAAACTGAGCAATGGAAAGATTAAGTAATTTGCCCCAGGTTATCAAGTAAGCGAAATAAGGGGTTCTTATTTGTACTGGATTTGGCTCCGAAGCCACTGCTTTTTACAGCCATGCTCTCCCATTTTTTATGTGGCAACCTTTTCTTTCCTTTATTGAAAACAGATTCTAGGATAGGCTCTGTAAGGTGGTCTAGACTTTTAGAAAATTAAAGCCTGTTCGATGCTTGGTGCCAAGAACTTTTCTGTGGCAGCTAATTGAGTCTGAAGTTTCCAACTGTAGTGGGTTTTGGCTTCCCCTGTCCTGGGCAGAGGAGGATGTAAAGCATGAAAGGGAGCCACATCAGTGCAGTATCCTTTAGACTTTCTTTGCTTTTCTCCAGAATGTCACGACAGGGATTCTATTAATGAGCAATGGCTGGTGTGTGCAAGTTTTATTTTGGGAATTGTATAAACTCTTTTTTTTTTTTAATCATTTACAATGGTTCCTGTTGTTGTAAATTAGAGACATGTGGCAGACTGGTTAGGTACATGGATTCTGGAGGCTGACTCCTTAGGTTCAAATCTCAGCCCTGCTACTTACTTGCTGTGTGATTTGGGGTAAGTTATTGAACCTCTCTGGCCCTCAAGTTTTTCATGTGATAAGGGTCCAGGATGTACTTAAACATAGGGCTGTTGTGAGGATTAAATGAGGCCACAGGTGTGATACTCAGAGTACCTGGCAGCAGACCATCTGAGAGTTATTTTTGGTATTAGTCCTTCAATTGTGGTTAACACTTTCATATCCTTTAG
Seq C2 exon
GAAATTCCATTTTACCATGTTTGGAGTGGATCTCAAAGAAACCTGCACTGCACCTTCACTCTGGAAAGATTTAGCCTGAACACAGTGGAGCTGGTTTGCAAACTCTGTGTGCGGCAGGTGGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGCACCGTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168:ENST00000453304:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACATCTTGAGAGACAGATGGGA
R:
CTCTGACACGGTGCAGTTGAG
Band lengths:
310-2295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains