MmuINT0170602 @ mm9
Intron Retention
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 homolog C (C. elegans) [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141479750-141481159:+
Coord C1 exon
chr3:141479750-141479899
Coord A exon
chr3:141479900-141480994
Coord C2 exon
chr3:141480995-141481159
Length
1095 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TAGCACCCCATGTCTTACAGGAA
3' ss Score
6.31
Exon sequences
Seq C1 exon
GAAGTTCTACAACTGGAGAGGCAAATGGGAGGACAGCTCCTAGAAGAACCCAAGGCTCTTCATTTTAAAGGCAGCATCCACAACCTGCGCCTGTCTATTCATGACATCGCCCATTCCCTCTGGAAGAGCAAATTGCTGGCTAAGTATCAG
Seq A exon
GTGAGGCTACCAAGAGACACTCACTACTTGGAAACAGATATAAGACAGATGATTCAGATTTTATGGTCATATGTATCTCCTTCTTTGGGGACATTGCCAAAGTCTCCCATGCCAACACTTATTTCTTCAAAACAGTGTGAAGCCAGGGTTTTGAAAAAATGCCCAATAAACATACTAAATGGAATAGTTTTTAAAGTATTTTTTTTATTATTATAACTGTACTGTTATTTCAGTAAGTTAGTTTTCAACATTTACTTCATTAATAGGAACAGCCTCAAGTGCATCCCAGGGAGGAAATAGTGCACTGCTACCTGATCTGACATGCATTGGTTTTCCATTTTACTAGCTAACATAACCTGTGCACTTTGTGGAAATCAGAGTTTGGTGGCTGACACGGAATGTCAGTGAATGGCGCTGTCACTCACTGGTTCTGCTGGGTGTGGCACCAGAACCTCAACCTAAACCCCTTATTCATTCATGAATCCTTTCCTTGGCTTAATTGCCACAAGCGTATAGGATTGGCTGTGTACAGTAATTCTGACAGTGACAAGTGAGTATCTGGTATGGGCTTCGTGTCTCTCAGGCTAAGGACTGTTCAGTAAGGACCAATTTCCAACTGCAGTGAGCTTTAGCTGCCCCTGCACTGGGCAAAGGGAGGGTAAAGGTATGAAAAGATGTGGGATCATCACAACATCCTGTGACTAGCTTTGCTCTTCTCTAATAGGGCACACCAGAGATTCCTTTTAATGAGAAATGATAAGAGAATGGAAGGTTTATTTTAGGATCCTTCTAAACTCTTTAATCACCTCATTAACAATGGCTGCTTTTCTAAATGAGAGGTAGATACTCTGGTTAGGTGTGGTCTCTAGAGTTGATTCCATGGGTTCCAGTCTCAAACAATCAACTTCCTCACTGTTAGACATTAGATGTTTCTTAACCTCTCTGCATCTCTGGTTTCTTGTGTGAAGAGAGATGAGGCCATGTTTGTGCAGAAAGCAGTCATGAAGTTGGATGAGGTGGAAAACTGAAAAGCTGTAGTGTTTGGTGGGTGTACCCAGCATCTCTTGTTTATGGTTAGCACCCCATGTCTTACAG
Seq C2 exon
GAAATTCCATTTTACCACATCTGGAGTGGCTCTCAAAGAAACCTCCACTGCACCTTCACTCTGGAAAGACTCAGCCTAAACACAGTGGAACTGGTTTGCAAACTCTGTGTGCGGCAGGTTGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGTACTGTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921-Unc5c:NM_009472:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTACAACTGGAGAGGCA
R:
TCTGACACAGTACAGTTGAGCTG
Band lengths:
312-1407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: