HsaINT0177880 @ hg19
Intron Retention
Gene
ENSG00000182168 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:12569]
Coordinates
chr4:96104048-96106347:-
Coord C1 exon
chr4:96106198-96106347
Coord A exon
chr4:96104213-96106197
Coord C2 exon
chr4:96104048-96104212
Length
1985 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AACACTTTCATATCCTTTAGGAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
GAAATTTTACATCTTGAGAGACAGATGGGAGGACAGCTCCTAGAAGAACCTAAGGCTCTTCATTTTAAAGGCAGCACCCACAACCTGCGCCTGTCAATTCACGATATCGCCCATTCCCTCTGGAAGAGCAAATTGCTGGCTAAATATCAG
Seq A exon
GTAAGGTTCCCAAGCCGAACAAAAGGTCTGGAGACATCTCTAAGAAAGAGGTCTAAAATTATATAGACATAGGAAATCCCCTTCCTTGAAATTAATCATATGTCATTACTTGTTTCTCCAAAATAGTTTGGGGTTATTTAGGATTTTTGAGAAACACAGACATATTTGAGGGAATGCTTTTTAAAAATTCTTCCTTTAAATAAATGTACTATCATTGTTTTATTTTTAATAAATGAAAGGCTTCCAAATCCATCATTTCAATTAATTTTCATACTAAATGTTCACATCAATGGGTAAAAACAGCTTGAAATGCATTCACAGAAACAAACAGAAGGACATTTTTATTCCATGGGACACAAATTAGGCTTCAGCCTTCCTAGGCCAGTACCCTTACATTGAAAAATTAGAGGGAGCCCTACTTTGGAGAACTGAAATAGCATGTAAAAGTAAAACCCAATCAGGATATTATTAAACAAGAGACAAGAAAATACTGGTCCCAAGTGTCATTTGTATATACCTGGGGGAAAATCACATGACCCTCAAGGAATTTTCCCCTCCTTCATCCGTCAGCCTGAGCTCTTGAGAAAACCACTTTGGCGGGATTGCAAGCCTCATATGCCATCCTAGGAGGGGCAGACATATTTAGAGAGCTGTGAATCCATGTTGATATTTATGCAAATTCAACCCAAACCCCAGCATTGCCTCTGAACTGGTAGCTATTTCCTGATGTAAGCCAATGAACATACTGGAAGACTGATGGGAAGACATTCTGGCTCCATTCTCACTCTCATTGGTCTAGTTCCTACACATAAATTATGGGAAACAAGCCTACTGGTTTGTTAACAATCATGAGCTTTGACGGAGGTTGCATGCCAGACTCTCTATGCACAGCTCAGTCCTTGATGGAGACAGAAGGCTTCTGACTTACTCAGTATACCTCTTTCTTTGCTTTCTTCTTTCCTCTGTGTTGCAGTTGTCATAAAATACTATAAATCTCCCTGTTTTAGGAGTAATTTCTTTTATACAATTATAAGAAAATACTATTTTAATGATAATGATAATATGATATTAGTTAAAGCTAAGCCTGGCCGAATGCTTACCATCTGCTGGACACTCTCTTCATACATTGGTTTAGCTCATTTAACCCCAGCAGACCTACGAATGAGAAGCTCTTTGTTTACTCTTTTGCAGATAGGAAAACTGAGCAATGGAAAGATTAAGTAATTTGCCCCAGGTTATCAAGTAAGCGAAATAAGGGGTTCTTATTTGTACTGGATTTGGCTCCGAAGCCACTGCTTTTTACAGCCATGCTCTCCCATTTTTTATGTGGCAACCTTTTCTTTCCTTTATTGAAAACAGATTCTAGGATAGGCTCTGTAAGGTGGTCTAGACTTTTAGAAAATTAAAGCCTGTTCGATGCTTGGTGCCAAGAACTTTTCTGTGGCAGCTAATTGAGTCTGAAGTTTCCAACTGTAGTGGGTTTTGGCTTCCCCTGTCCTGGGCAGAGGAGGATGTAAAGCATGAAAGGGAGCCACATCAGTGCAGTATCCTTTAGACTTTCTTTGCTTTTCTCCAGAATGTCACGACAGGGATTCTATTAATGAGCAATGGCTGGTGTGTGCAAGTTTTATTTTGGGAATTGTATAAACTCTTTTTTTTTTTTAATCATTTACAATGGTTCCTGTTGTTGTAAATTAGAGACATGTGGCAGACTGGTTAGGTACATGGATTCTGGAGGCTGACTCCTTAGGTTCAAATCTCAGCCCTGCTACTTACTTGCTGTGTGATTTGGGGTAAGTTATTGAACCTCTCTGGCCCTCAAGTTTTTCATGTGATAAGGGTCCAGGATGTACTTAAACATAGGGCTGTTGTGAGGATTAAATGAGGCCACAGGTGTGATACTCAGAGTACCTGGCAGCAGACCATCTGAGAGTTATTTTTGGTATTAGTCCTTCAATTGTGGTTAACACTTTCATATCCTTTAG
Seq C2 exon
GAAATTCCATTTTACCATGTTTGGAGTGGATCTCAAAGAAACCTGCACTGCACCTTCACTCTGGAAAGATTTAGCCTGAACACAGTGGAGCTGGTTTGCAAACTCTGTGTGCGGCAGGTGGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGCACCGTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168-UNC5C:NM_003728:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACATCTTGAGAGACAGATGGGA
R:
CTCTGACACGGTGCAGTTGAG
Band lengths:
310-2295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)