BtaINT0163644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017365 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr22:15435609-15436506:+
Coord C1 exon
chr22:15435609-15435724
Coord A exon
chr22:15435725-15436361
Coord C2 exon
chr22:15436362-15436506
Length
637 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCACCCAACCCTGCCCTCAGAAC
3' ss Score
7.58
Exon sequences
Seq C1 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGTGGGAAGTCCTTCAAACGCAGCATGTCTCTCAAGGTGCACTCCCTGCAGCACTCCGGGGAGAAGCCGTTCAGATGCGAG
Seq A exon
GTGAGTCCACTTCTGCCCCCAGGGACCACCCTGAACAGGGCAGGGATCAGGGGCAACAGCAGCTTAAAAACCAGGGGGTAGGGGGACTGGAGTATAGGGTGCAGAAAGAGAGGGGGCCCTCCTGTTGTTTGCCTTCTACTCCATCCTTCCCTGGTTGCCCACCTACACCAACCCCCCCCCCACCCCCGCCACATACCCCTGCTTCCTCTCACTATCTCAGTGCTGCACGTTCAGGGTGGGAAGTCTGCATGGGCTGGAACCATAGGACAGGCTTTCTGGAGAGGTGGAGAAAGACACATCTTAGGCAAAGATCAGAGATGGAGTTGCAGGTGGGGCTGAGGGAGGCCTTTGGACAAGGAGGAAGGATGGAGAGTCTTAAGCACAAGGGCTCCCTCCACTCTGGGGCCTTTTCCCACTTGCTGAGCCCCATTCCTGCCTGGGCCTCTCTACCTGTGCCCCATGCGCTGCCCCACCCCAGGAGCACCTCAGCCGGCCTTGGCATCCACCCGTCCTTGCCCAGGAGTCCCTCCCACTGTGAGTCCTTCCCGGCCCTGTGAGCTGGGGACCAGCGCTTACCTCCCTGAAGGTTATTCCCCCACTCTGCCCTGGGTCTTGCCCCACCCAACCCTGCCCTCAG
Seq C2 exon
AACTGCAATGAGCGCTTCCAGTACAAGTACCAGCTGCGGTCACACATGAGCATCCACATCGGCCACAAGCAGTTCATGTGCCAGTGGTGTGGCAAAGACTTCAACATGAAGCAGTACTTTGATGAGCACATGAAGACCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017365:ENSBTAT00000023089:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=14.3),PF134651=zf-H2C2_2=WD(100=51.0),PF064679=zf-FCS=PU(90.9=61.2),PF134651=zf-H2C2_2=PU(38.5=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACATGCCCTTCACCTG
R:
CTGTGTGGGTCTTCATGTGCT
Band lengths:
254-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]