MmuINT0179650 @ mm9
Intron Retention
Gene
ENSMUSG00000013419 | Zfp651
Description
zinc finger protein 651 [Source:MGI Symbol;Acc:MGI:2670992]
Coordinates
chr9:121675585-121676501:+
Coord C1 exon
chr9:121675585-121675700
Coord A exon
chr9:121675701-121676356
Coord C2 exon
chr9:121676357-121676501
Length
656 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGCTTTTCTCTTCTTCACAGAAC
3' ss Score
9.45
Exon sequences
Seq C1 exon
CCCACACCAAGGACATGCCCTTCACCTGTGAGACCTGTGGGAAGTCCTTCAAGCGCAGTATGTCGCTGAAGGTCCACTCGCTGCAGCACTCGGGGGAGAAACCTTTCCGCTGTGAG
Seq A exon
GTGAGCTCTGCTGGCTGCTGGCTGTCCCACCTCCACCCACCCCCATCTGCAGGGAGGGGGAGGAAGGGAGGTCAGGAGGATCTGCACGCCTGACGTGGCGGCACACGTATGCCCGTAATCCTGGGACAGGAGAGACAGAGGCAGGAGGAGCAGGGCTTCTATTCAGTGGGTTTGGGGAGGCGGTGAGTTGGGGAAATGTTTCTTTGCAGGCCTGAGAACTTGAGTATCAACCCAGGTTTAAAAAAGGAAAAGTAGCAGGGTGGTGGTGGTGCTTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATCTCTGAGTCCCAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAAAAAAAAAACAAAGTAAATAAACAAATAAATAATAAAAAATAAATCGGGCATGATGGCACATGCTCACAATCGCATTGCTGTGAAGGCAAAGAGAGTTGGGTGCCTGGAGCCCACTGACCGGTCAGCGCAGCCTGAGCAGGGAGGTGAGGCCATTGAGAGGCCCTGTCTTAAAACAGCTAAGGTAGAAGGCACCTTAGGAAACACTGGCCTACACACAGGTTGGGTAAGGCAGGATTGAAGGTGTAGCTTTTCTCTTCTTCACAG
Seq C2 exon
AACTGCAACGAACGCTTCCAGTACAAGTACCAGCTGCGGTCACACATGAGCATCCACATTGGCCACAAGCAGTTCATGTGTCAGTGGTGTGGCAAGGACTTCAACATGAAGCAGTACTTTGACGAGCACATGAAGACACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013419-Zfp651:NM_001166644:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=14.3),PF134651=zf-H2C2_2=WD(100=51.0),PF134651=zf-H2C2_2=PU(38.5=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAGGACATGCCCTTCAC
R:
TGTGTGTCTTCATGTGCTCGT
Band lengths:
254-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: