HsaINT0184665 @ hg38
Intron Retention
Gene
ENSG00000114853 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr3:42663012-42663941:+
Coord C1 exon
chr3:42663012-42663127
Coord A exon
chr3:42663128-42663796
Coord C2 exon
chr3:42663797-42663941
Length
669 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCCCCAAACCCCACCCCCAGAAC
3' ss Score
6.75
Exon sequences
Seq C1 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGAAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTGCACTCACTGCAGCACTCAGGGGAGAAGCCGTTCAGATGTGAG
Seq A exon
GTGAGCTTCCATCTCCTGCCTGGCCTGCCCGAGGGGTCACCTGGGAGGGGCAGGAATCAGGGAGCGCAGCTGCTGAAAAACAAAGGGCTAGGGGGTGGAATGTAGTGTCCAGAAAGAGAGAGCCCTGCCCTCTGAGGTCTGCAGCCCCTGCCTCCCACTCCCACCCAGCCCCTACTCTTCTCTGGCCCACTCCCATCCTGCCCTTCCTTCCCCAACCCAGCCCCACACACTCAGGGTGGGAAGTGTGTGTGGGCTACAGCCCTAGGAGCAGGCTTTCTGGGGAGGCAGATTCAGGAGCATCCCAGGCCTGGAGCTCAGATGAGACAACAGAGCTGCAGGTGGGGAGGTGGGGGCAGGGGCTGGGCGTCTGATCAGGAGGAAGGATGAGGGACCTCGTGCCTTAAGCATGGGGCTCCCTCTACTCTCTGGCTTTTTCCCACTTCCGACCCCCATTCCCCACCTAAGCCTTGGGTGCTTGTGGCCTCTCCTCTTGTGCCCATGTACTGCCCACCCAGATGCACCTCGGCTTGCCCTCATGTCCCCATCTCCTTGCCCAGGAGCCCCTGAGTGTGTCCCTCCTTGGCCCTGTGGCCACAGGGGAGCTGTTCCCTCCACAAAGGCTGCTCTTCTGCTCTGTGCCTGGGCCTCACCCCCAAACCCCACCCCCAG
Seq C2 exon
AACTGCAATGAGCGCTTCCAGTACAAGTACCAGCTGCGGTCACACATGAGCATCCACATTGGCCACAAGCAGTTCATGTGCCAATGGTGCGGCAAGGACTTCAACATGAAGCAGTACTTCGATGAGCACATGAAGACCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114853:ENST00000232974:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=14.3),PF134651=zf-H2C2_2=WD(100=51.0),PF134651=zf-H2C2_2=PU(38.5=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACATGCCCTTCACCTG
R:
CTGTGTGGGTCTTCATGTGCT
Band lengths:
254-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains