HsaINT0184665 @ hg19

Intron Retention

Gene

ENSG00000114853 | ZBTB47

Description

zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:26955]

Coordinates

chr3:42704504-42705433:+

Coord C1 exon

chr3:42704504-42704619

Coord A exon

chr3:42704620-42705288

Coord C2 exon

chr3:42705289-42705433

Length

669 bp

Sequences

Splice sites

5' ss Seq

GAGGTGAGC

5' ss Score

8.7

3' ss Seq

CCCCCAAACCCCACCCCCAGAAC

3' ss Score

6.75

Exon sequences

Seq C1 exon

CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGAAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTGCACTCACTGCAGCACTCAGGGGAGAAGCCGTTCAGATGTGAG

Seq A exon

GTGAGCTTCCATCTCCTGCCTGGCCTGCCCGAGGGGTCACCTGGGAGGGGCAGGAATCAGGGAGCGCAGCTGCTGAAAAACAAAGGGCTAGGGGGTGGAATGTAGTGTCCAGAAAGAGAGAGCCCTGCCCTCTGAGGTCTGCAGCCCCTGCCTCCCACTCCCACCCAGCCCCTACTCTTCTCTGGCCCACTCCCATCCTGCCCTTCCTTCCCCAACCCAGCCCCACACACTCAGGGTGGGAAGTGTGTGTGGGCTACAGCCCTAGGAGCAGGCTTTCTGGGGAGGCAGATTCAGGAGCATCCCAGGCCTGGAGCTCAGATGAGACAACAGAGCTGCAGGTGGGGAGGTGGGGGCAGGGGCTGGGCGTCTGATCAGGAGGAAGGATGAGGGACCTCGTGCCTTAAGCATGGGGCTCCCTCTACTCTCTGGCTTTTTCCCACTTCCGACCCCCATTCCCCACCTAAGCCTTGGGTGCTTGTGGCCTCTCCTCTTGTGCCCATGTACTGCCCACCCAGATGCACCTCGGCTTGCCCTCATGTCCCCATCTCCTTGCCCAGGAGCCCCTGAGTGTGTCCCTCCTTGGCCCTGTGGCCACAGGGGAGCTGTTCCCTCCACAAAGGCTGCTCTTCTGCTCTGTGCCTGGGCCTCACCCCCAAACCCCACCCCCAG

Seq C2 exon

AACTGCAATGAGCGCTTCCAGTACAAGTACCAGCTGCGGTCACACATGAGCATCCACATTGGCCACAAGCAGTTCATGTGCCAATGGTGCGGCAAGGACTTCAACATGAAGCAGTACTTCGATGAGCACATGAAGACCCACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000114853-ZBTB47:NM_145166:4

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.045 A=NA C2=0.043

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=PD(69.2=46.2),PF0013017=C1_1=FE(76.0=100),PF134651=zf-H2C2_2=PU(65.4=43.6),PF054957=zf-CHY=PU(12.5=23.1)

A:

NA

C2:

PF0013017=C1_1=PD(14.0=14.3),PF134651=zf-H2C2_2=PD(26.9=14.3),PF054957=zf-CHY=FE(66.7=100),PF134651=zf-H2C2_2=WD(100=51.0),PF064679=zf-FCS=PU(85.7=61.2),PF134651=zf-H2C2_2=PU(38.5=20.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000232974