GgaINT0093592 @ galGal4
Intron Retention
Gene
ENSGALG00000005287 | ZBTB47
Description
zinc finger and BTB domain containing 47 [Source:HGNC Symbol;Acc:HGNC:26955]
Coordinates
chr2:1992029-1992765:+
Coord C1 exon
chr2:1992029-1992144
Coord A exon
chr2:1992145-1992620
Coord C2 exon
chr2:1992621-1992765
Length
476 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACTCATCCACCCCACTGCAGAAC
3' ss Score
7.15
Exon sequences
Seq C1 exon
CTCACACCAAGGACATGCCCTTCACCTGCGAGACCTGCGGGAAGTCCTTCAAGCGCAGCATGTCCCTCAAGGTCCATTCTCTGCAGCACTCCGGGGAGAAGCCTTTCAAGTGTGAG
Seq A exon
GTGAGGTCTCTTCTTCTCCCCACATCCCTGACGCCCCATTTCCTCACAAATAGGGGCAAAAGCGCTGAACTGGGGAAGTGTCCTCCAGTTCACAGTGCTTTGTGCTGTTTGGACGTTTTCCCCCTTTCCCATGCTTTGTGTTCCTGCCTGAAGGCCTCGCCAACACTACAGTGAGACTCAGGCTTTTGTAGAATCATAGTCTGTCTTGGTTTGGAAGGGGCTTTAATGATCATCCAGTTCCAACTTCCTCCGGTGTGCTGGGTGCCCCCTACCAGATCAGGCTGCCCAGGGCCTCATCCAGTCTGGCCTTGGGCACCTCCAGGGATGGGACATCCACAGCTTCTCTCAGCAACCCCAAAAGTCACTTATTTCCATTATTTCAGGGAAAAAGCAATTTTATCCTTTTCCCATATGAGGTGGGGTGGGATGTTGGGGTGTTTCCTGCGCTTGTCAACCACTCATCCACCCCACTGCAG
Seq C2 exon
AACTGCAATGAGCGCTTCCAGTACAAGTACCAGCTGCGCTCCCACATGAGCATCCACATCGGCCACAAGCAGTTCATGTGCCAGTGGTGTGGCAAGGACTTCAACATGAAGCAGTACTTCGATGAGCACATGAAGACGCACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005287:ENSGALT00000008478:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=14.3),PF134651=zf-H2C2_2=WD(100=51.0),PF134651=zf-H2C2_2=PU(38.5=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCAAGGACATGCCCTTC
R:
TGCGTCTTCATGTGCTCATCG
Band lengths:
254-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]