RnoINT0167015 @ rn6
Intron Retention
Gene
ENSRNOG00000019382 | Zbtb47
Description
zinc finger and BTB domain containing 47 [Source:RGD Symbol;Acc:1562434]
Coordinates
chr8:130405447-130406586:+
Coord C1 exon
chr8:130405447-130405562
Coord A exon
chr8:130405563-130406441
Coord C2 exon
chr8:130406442-130406586
Length
879 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGCTCTTCCCCTCCTCACAGAAC
3' ss Score
10.31
Exon sequences
Seq C1 exon
CCCACACCAAGGACATGCCCTTCACCTGCGAGACCTGTGGGAAGTCCTTCAAGCGCAGTATGTCGCTGAAGGTCCATTCGCTGCAGCACTCGGGGGAGAAGCCTTTCCGCTGTGAG
Seq A exon
GTGAGCTCTGCTGGCTGCTGGCTGTGGGGTGCCCTGGAGAGCCCCACCTCTACCCACCCCCATCTTCAGGGAGGGGGAGGAAGGGAGGTCAGAGGGAGCCACAGCCTGACCTGGCAGCACAAGCCTGTGGTCCCAGGTCTGGAGAGACAGAGGCAGGAGGAGCAGGAGTTCAAGACCCACCTGTCACTGAGTGGGTTTGGGGAGACTGTGAGTCTGGAAAATGCTTCTTTGAAGGCATGAGAACTTGAGCATCAGTTAAAAAAAAACCTTAAGTCTGGGCACGGTGATGGTGACGGTGACGCATGCTTGTAGTCCCAGCGCCGGGGAGGCAGAGACAAGTGCGTGCCCAGAGCTCACTGGCCAGTCAGCACAGCCTAAACAGGGAGGTCAGACCAGTGAGAGGGCCTGTCTTAAAAACAGCAAAGGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAACAGCAAAGGTGGAAGGCACCTGGGGAAACACCGGACCTCTAGCCTCACATGGACACAGACACACATGCACATGCACTCATGTACACGGACATGCCATATATGCACACACACATGTGCATGCACACACATGGACACACACACAGCAAAGGTGGAAGGCACCTGGGGAAACACCGGACCTCTAGCCTCACATGGACACAGACACACATGCACATGCACTCATGTACACGGACATGCCATATATGCACACACACATGTGCATGCACACACATGGACACACACACACTTAGTTTCAGGTTGGGTAAGGCAGGATGAGGGTGTCTGTAGCTCTTCCCCTCCTCACAG
Seq C2 exon
AACTGCAATGAGCGCTTCCAGTACAAGTACCAGCTGCGGTCCCACATGAGCATCCACATTGGCCACAAGCAGTTCATGTGTCAGTGGTGTGGCAAGGACTTCAACATGAAGCAGTACTTTGATGAGCACATGAAGACACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019382:ENSRNOT00000043346:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(69.2=46.2),PF134651=zf-H2C2_2=PU(65.4=43.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=14.3),PF134651=zf-H2C2_2=WD(100=51.0),PF134651=zf-H2C2_2=PU(38.5=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCAAGGACATGCCCTTC
R:
TGTGTCTTCATGTGCTCATCA
Band lengths:
254-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]