DreINT0177291 @ danRer10

Intron Retention

Gene

ENSDARG00000079547 | zbtb47b

Description

zinc finger and BTB domain containing 47b [Source:ZFIN;Acc:ZDB-GENE-091118-34]

Coordinates

chr24:20447313-20447883:-

Coord C1 exon

chr24:20447768-20447883

Coord A exon

chr24:20447458-20447767

Coord C2 exon

chr24:20447313-20447457

Length

310 bp

Sequences

Splice sites

5' ss Seq

GAGGTAGGT

5' ss Score

9.65

3' ss Seq

TACTGTATCTGATGCTGTAGAAC

3' ss Score

4.47

Exon sequences

Seq C1 exon

CTCACACTAAGGACATGCCGTTTACCTGTGAGACATGTGGGAAGTCCTTCAAACGCAGCATGTCTCTTAAAGTGCACTCGCTTCAGCACTCTGGAGAAAAGCCCTTCAAGTGTGAG

Seq A exon

GTAGGTTTTATGAGTTGCAGTTGTAGGGCATCACATTCTTGTGTCTTTTGTAGAAAAAAAGTCAGTTCACACCACTTTTTTTAATCAGTGAAAACAGACAAGTTACACTAACATCTGATGACTAGAAAGTGTCCTATTTATTCATAAATGTAGGGCTAAAGTGTAGGTTTTGCCGTTCCACCTTTTATACTGTACTTATAATATGTTAAATGATTTGGTGAGAAAATTGTTTGTGAAGTTTGATGTGGTGTAGATTTAGTGCTAGAAGAACAGAGATGTGAATTCTAATGTACTGTATCTGATGCTGTAG

Seq C2 exon

AACTGCAGTGAACGATTCCAGTACAAATACCAGCTGAGGTCACATATGAGCATCCATATCGGACATAAGCAGTTCATGTGCCAGTGGTGTGGGAAAGACTTCAACATGAAGCAGTACTTTGATGAACACATGAAGACACACACTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000079547:ENSDART00000141823:3

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=PD(69.2=46.2),PF0013017=C1_1=FE(74.5=100),PF134651=zf-H2C2_2=PU(65.4=43.6),PF054957=zf-CHY=PU(11.3=20.5)

A:

NA

C2:

PF0013017=C1_1=PD(15.7=16.3),PF134651=zf-H2C2_2=PD(26.9=14.3),PF054957=zf-CHY=FE(67.6=100),PF134651=zf-H2C2_2=WD(100=51.0),PF064679=zf-FCS=PU(85.7=61.2),PF134651=zf-H2C2_2=PU(38.5=20.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSDARP00000138046