BtaINT0164248 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012615 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr2:52399450-52406207:+
Coord C1 exon
chr2:52399450-52399630
Coord A exon
chr2:52399631-52405629
Coord C2 exon
chr2:52405630-52406207
Length
5999 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AATCTTGTTCTCTCTCCCAGGAA
3' ss Score
10.43
Exon sequences
Seq C1 exon
GGAGAATTGCTTGATGGAGCACAAGACTACATGTCAGGCCTAGATGACATGACAGACTCCGACTCCTGTCTGTCTCGAAAGAAGATCAAGAAGACAGAGAGTGGCATGTATGCATGTGATTTGTGTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAG
Seq A exon
GTATGAGTGACTTTGACTAGCTAGTTAGAGCTTCCCGGCGTGCTGTACATTTCGTAATATTTAATGAGTGCACTTGTGCAACATAAGATGTAGCATATGCTGATACCTTCAACAAGGAAGAAATAATGCTTTTGCCTAGCTCAGTAGGACTTTTTTGTTGCCTGTTTATTGGATCATTCATGTGTTTATGAGCCTGCTTGTCTTATATTTTTCAAGTTAGTCTGTACACCAAATTCACAAATCCTGTCAAAGATGTATTTAAATGGCCAGGGCAACGAAATGACATGACACAAGCCAGCTACAGAAAATATCTTCAAATTCTTAAGCTGTGATGAACCTATATGTGGAAAAATTGAACAATAAAAAATTCAGTCAATGCTGTATTTGTTTCATCATCGAAACATCAAGTAAGCCATGAGTGGCGGGGGGGGCGGGGGTTGGTATTCAGTTTGGTTTTTACAAATTGGCCATATTTTGAATAAACTAAAAATGTTAGGACTGTGAAAGAAAAGACATAAGTGAATAATAGGCCAAATGAGCTACTGAAATTACTGATATTTGGAAGACTAAAATACAACTTTCTAAATGTAGACTATTTCTTTCCAATTCATGCATTCCTTTTCAGGAAGAATTAAACAGGGTTGACAAGATAGCTTGATTTTTCCCTATAAGTAGAGAGAGAATGGCTTAATTTTTCAAAAGAAAGCCAAGGGCCATAAGAAGAAGCAGTATTTGTTCCCCAAATCCAAGATCTGATCTATTATGTGCTGGACCCATACCTGTGTTCCCTCCCTCCTTCCCCCTCCCACCGTTAACCAAAAAATAGCTCTGCTTCATCCCTGTTCTTAATCCATCTCCAGCTTTTCTCCACCAGAAATGTGGTATGCTGCACTGGGCCTAGGTGGGAAAAGAAAGAATGTAGGATTGCAACCAAAATACTGATGGCTGGAAATTATAGGAAGGTTCTCATTTTAAACCAAGATGTCTAGTATCAAACATTTTTAAAATATAGAGGAAAAAAATTAACCTAACATAAATGCTTTTGGGGGGAAAGTGATGAAGATGCAAACATGAAAAACAAAGAAAAGGGAATGTGAATACTTCCTGTCACATTTTGACCGTCTACATCCATAGTATCCTTTTTAGCGATTGAAAATGATCCTTGGGAAGCATTTGTACTGTCACCTTGCCTTACTCCTCACTGGGCACGTGGCAGAGGCCGTACAAGTGACCACAGTCACCTGAGGCTGTGGAAAAGTTGGGTGAGTTTTGCAACATTAAACATTGAGGGTATTTGTGAAAAGAACAAAGTTGATAAATAACAGCGCTCTTATTTCAACCAACCCAGTTTTCTTTTTCTTCAGTTGTCTGATACTAATTGCCATTATTTTGAAAGTTTTACTACTGATACTTTAAAAGCAACCTAATTTAAATAGCAAATCCCAATAGTTTTTATACTTATGTGACCTAATTCAATGTTTGAAATGTCAGTTTTCTTACACTTGTCTTTTATGATACATATCAATAGATATTTTCTTTAGTACCAAGTCCTATTTATGTATTATAGATTAAATATATTTTTATACCTAAATTTACTTTAATATCTTAATCAACCTCAAATATATTTTGTATTTCATTATTCAGCTACAGTAAGCACATCATTGAAGGCATCTTTCCCTCTCTGATTGGGTTTATTATATGAACATATGTAAACTCTATCATTTACTAGAGGGTGAGTGCAAAACTTTTATTTTAGTGAGGGCTGTTATACATATTGACATCCAGCCAATACCTTTATTTCTTACAAATTAGTCCATAAACTCCAAGGTGTATAGATAGTTGAGAGACACCAAAGTTGACAAACACAAATATGCATAATCAATTTGAAAAATATACTATACTAAAAAAATGTTCTGATCCTTTAAGATGTGAGAAAATCAGCTGCCTAGAAACATTGCCTAGCAACAAGATGCTAACCATCCAATGATTTCTCTAAACTTGTGATTAATTATTCTCCTGTTGGCTTCCCAGATTGTCAAGTTTCCACTGTGTAAACTTTTTTGGTCTCTTGACCAAACATCTCGTGACATTTTCTACTGTCAGTGTATTAGGTTCTATCAAAGTGAAGTTCTTCATGAATTTTCTATCACTATGATATATGTGGAAATTTAGCTTACTTTCCTTCCTAACTGGGCCCCACAAGCCTTTTATTTGTTTATATTAAGGACTAGTAATACTTTGAGAATGTGTTAAAAAGAAAATTATAAGGAGAACAATCTTTGGGTTGATTGATTCTAAGGTTGGGAAATGAGATTGAATGGTCATTTGATTATGTGTTGATTATGAATGTGTCATTGATAAACTGTATTTGTTATATCTGTCTACAATTTAACATATAAAATAGTTTAAGAAGGAAATTATGAGCTACTTATTTTCAAGATTCTGTGCTCTTTTACCTCAGCCTGTTTATTTCCTAAGCAGACACCAAAAATAATAATCCTTAATTCTCCTTACCAATGGCTCATTGCTTGCTTGCTTTTCCTGGGAATTGGGACTGGGACAGAGGAAGAAAACCCTACATAAATGTTGATTTCAATAGAATTAATTGTCACAAACAAGGAATGAGAAATAAAAAATCTGAAACTCTTGTTAAGCACTGTAAACAATTCACTTATTAAAAAAAAAAAAAGAATTCACTTAAATTCCACTAAAATTTAAATCTGACATCTATTGAGTACTTTCTCTATTGAGAAAGGTAGGTGCTTTTAAACCTACTTTATTTAGAAAAGTAATAAAAAAATGTTCCTACTTTGGAGTGAAGGTAAAGTTTCAAATTACCCAGCCAATTTTGTTTTTCAGTTACATGATAATCTTCTTCATACCACAGACCTTTCATTTATGAATTTCAGTTATTCTGTCAGGTGAATCATGAACCTTGATATTAGAGGGAAAAAAAAAAACTTACCCTGTAAAAGTTTTTACTTACTCAATATCAGTTTGGATGTTTTTTTCTGAATTTTGTTCATGTGGAAACTTAATTCCAGGACATCTTGATTTGAATCAGGTAAACCAATCAAGCAATTTAAAAAGAGATAAATGGCCAAGTCAGTTCCTATTTAAACTGAATGTATTAAATGCTTACCAGTGAAATTTCTGGAGATTAGTAGAATATTTAGTGCAATTCTAAAGCTTCTGCTCTCAAATTCTGTCTTTGGCATGACATAATAGCTGAAAATTTTTTCTTTTAGGTTGTTGGTTCATAATGTAGAATTAATGTATTTTAATATAAGCATGATATTTATGATCAAAAGGACTCCCTTAAAATCAACCGCCTGTAACTATCGAAAATCTATGGGCTACGCCGGTGCCTCAGTGGTAAAGAATTCGCCTGCAATGCAGGAGACACAGGAGACGTGGGTTTGATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGAATGGCAGACCACTCCAGTATACTAGCTGGGAAAATCCCATGTACAGAGAAGGCTGGCAGGCTACCATCCACAGGGTCAAAAAGAGTCAGACACAACTGAAGTGACTAAGAATGAGCACACATCAAATATCTATATCTTAAAGACTTCAGTTCAGTGGGCATCCCCGAGGCATATCTAACAGGCCTTGAACTTGTCCTTGAGAACGCTCATTAAGGACATTGCTCTGTGTTTTGTTCCTTTGGAAAAGAGACAGCCATATCAACTGTGATGTTTGTTCACAATTATTCACACAGCTGATCCATGTAGTGAACTAACCAATCAACATTCCTGGGCCCTTGAACTTCTGAGACATTAAGAGAGGTTGCAGAACAGTTCTGCCCACATGCATGTAGCAACTAAAGAACCAAGAAAGTTTTTAGTTTTTATCTGCAATTTCTCTTCTCTCCATTCAGATTCATTTCTTCCATGTACTTTGCTCCTGATACATGCATCTTGCTTACAACTTGGGAAATTACTGAACCTGTACTAATAAATACAAATAAAAATATCGAACATTCATTGAGTGCTTACTATGTGCAGTCCTTGAACTAAACACTTTACCTACATTGTCTCCTTCACTCTTGGTGCCCAGTCTACAAGTTAGGTCCCCAAATGATTTCCCTATTACCAACAAGGACCCTAATCCTCAGAGGGAGAGGTTAACATGCCTTAGGCGACACAGCAGGTCTTAAAAGATGGATTTGAACCTGGGCAGTCAAACTCTAGAATCCATCTTCCCTATCTAACTCTGCACCACCCTGGCTCTGTGAATGAATTACCACTGTCAGAATCATCTTATCCTAGCTCCTAATAGCATTTTTTTAAAGGTCCAAGTAAAATACACACAAGAGAGATCAAATTCATATATAGCAACTTGAGGTTTTCTGGAAGGCAAAACCTCTGTCTTTTTCCCAAATGCACTTCTGCTTCCTGTTAAATTACCTTCCCACCCGGTGGTCTTGTCAAATGAAAAAGCACACTCTCTTTCCAAACTCTTGGCACTCCATTGACATTCTCTTCTGTGTTATCTACTTTACCTCATTCAATACATCTTTTCCAAAAGTTAAGTTCTTGTGTGGTTTGAATTACACTTTTTTTCTTCAGACTACAAGCGGCCTTGAAACAGATTACTAGAATCTTCTTTATTTCCAATACTTTCTATTTTTTTTCCTCTTACAGGTAAATAACTTCTTCCTACTCTAATATTGTGGTTTACCACATTTTATCACTTAATTTATCCTGGATGTTACAATAAGATAAAGATCATTAATGAACTAACATAGAGCATCCAACAGCATTTTCTAAATAGTAGCATGCCCCAGAGGCATTCAATAACATTATTAAAGATATTTGATTACTAATTGAGATTATATATCACCATATACCTGAATACGTGAAGTGTGTAGAATGGATTCCTAATCTGAATGTCACTTAGCAAATGAAAATGGTATTGAATCTACTCATGCTGGTTTTCGATTTGCTGAAATGCGAATTTGTATTAGGAAATATAAGCACATAACTTCATGTACGTTATGATGATACATACTGCTCTTCATGACACATTTCTGACTTTAATTCTGGAGCATCAGTCTGATAAATTTTTTTTGTCAGTTCTATTTTGGAAATAAACTTTTAAGTATGGCAGCTATGGAAGGTGTTGAAGGCATTCCAATGCTATTTGTGGCCTGGAATCAACCAGATGTGTTTAGGCTTGGCACCAGTTTCAAGTTCCAAACACTGGTTAGACACTGCCTGGAATGCCAAAGGAAATACAGCATTCTCTAGCTGAAGAGTATTTTAACACTCAACAAGTGGCTGACATCTCATGGAAAACTTTAGAGGGAAAACACTGTTTGGGTTAGTTCAGCCTGCATGACATCTATCTTTCTGCTTTGTGTTTTCAAATGATTTCTTCTCTAATTTGTATTCTTAGAAGCATATGGCTGATAAGACATTCTTAACATCATCTTTCCTCTATTCCTGCTCCTGCCTGACTTGGCAGTTTGCTCCTGTTTGAGCTATAAAGCCCATTTCCAAAGCAATCATTTATGCTGTAACAAGCAGAGGGTGTATATGGCAAAGTCAGCGATGATGCCATCTTGATCATTTTTATACAAGTCCTTGTTTTTAAAAATGTACAGAAAAGAATTACCTGAATACTACGTGCTGATGCACGAGAAATTTCTTGTGCAGTAGAACATTTTTCAGAGTTTTTAATGAGGCAATTAGCAATTAAAAGCTTCCTGAGATTCTTTTGCTTTAGTAGCTTTGGAGTTTTTTCTTGTTTATTAACTGTATTGCACCCAGAAGCATGCATTAGAACGCCAAATTAAGAGATGAAAAACGCATCTGCCTAACCCTCGTTCCATGAGACTGAGGTGTGTTGATCTTCCAGCCGTTCGCAGACTCCCTTCTGCCTCGGTCCGGACACATTTGCAGAATTCTTGGAAAAGAGACTTCCCGCACAGACACTAATCACCCTGTAATCTTGTTCTCTCTCCCAG
Seq C2 exon
GAAAAAGACCACATCAGTGTCAGATTTGTAAGAAAGCGTTTAAACACAAGCACCACCTTATCGAGCACTCGAGGCTTCACTCAGGCGAGAAGCCCTATCAGTGTGATAAATGTGGCAAGCGCTTCTCACACTCGGGCTCCTACTCGCAGCACATGAATCACAGGTATTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCGGCGGAGCGCGAGGCGCGCGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACTTGCAGAGCATCACTCCTCAGGGGTACTCTGACTCGGAGGAGCGGGAGAGTATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAAGGCGAGGATGGTTATGGCAAGCTGGGGAGACAGGATGGCGATGAGGAGTTCGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACGGATCCCGAAACGATACGAGATGAAGAGGAGACTGGAGATCACTCCATGGACGATAGTTCCGAGGATGGGAAAATGGAAACCAAATCAGACCATGAGGAAGACAATATGGAAGATGGCATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012615:ENSBTAT00000061551:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.766
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.8),PF134651=zf-H2C2_2=WD(100=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]