RnoINT0167575 @ rn6
Intron Retention
Gene
ENSRNOG00000004677 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:RGD Symbol;Acc:1307272]
Coordinates
chr3:29862473-29868536:-
Coord C1 exon
chr3:29868356-29868536
Coord A exon
chr3:29863054-29868355
Coord C2 exon
chr3:29862473-29863053
Length
5302 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CGTCTTGTTCTTTCTCCCAGGAA
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGAGAATTGCTTGATGGAGCACAAGACTACATGTCGGGCCTAGATGACTTGACAGACTCCGATTCCTGTCTGTCTCGAAAGAAGATAAAGAAGACAGAAAGTGGCATGTATGCATGTGACTTATGTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAG
Seq A exon
GTATGAGCGACTTTGACTAGCTAGCTAGAGCTCTCCGGCCTGCTGTATGTGTCATAATATCTAATGAGTACACTTGTGCGGCCTAAGATGTAGCCCTTGCTGATACCTTCGACAAGGAAGAAGTTAACACTTTTGCATAACCCAGTAGGACTTCTGTGTTGCCTGTTTATTGGACCATTCATGTGTTTATGGGTGTGCTTGTCTTCCTAACTTTCAAGTTATCTGTAAAACAAGTTTGCCTATCGTGTCAAAGGGAAATTTAAATGCCCAGGGTAATGAAATGGTACAGCGAGAGCTAATTATTGAACGTATTTTCCAATTCTTAAGCTGTGGTGATTTTTTTTATATGTGTAAAAATCTTATGATAAACCTGGTCAGTGATATGCTAGTGGGCTCACCAAATGCTAAGTACGTCATGCTTTGGGGTGACTTTGTTTGATTTTCATAAATTGGCCACTTTTGAATCAATTATAAATGTCATTTCCATGAAAGAAAAGCAAGAGACCAAATAAGCCACTGAATCCTGTAATTGAAAGACTAAAAGAGTATCTCCCATTCGTGTGTTATTTATTAATCCCTGACACTGACAAAGCCCTAACACTCTCTGGGATATCACGTTTCCTAAAAGGGCATCGGGTAAAGATACTTTCACAACCCCAGATCAGATCTGCAGCTCTGTAGTAGGGTTTCCATCAACGTTTTCTCTCTCTCCTCCCCATCTTTCTGCTCTAAATGAGGAAACTTAGTCTTACCCCCTCCCTCATCCCTTTCCAAGTCTCCTTCACTAGAAATATGTATTTGTCCAGGTGGGGAAAAGAAAGTATAGAGTCATATTCAAAATATTGGAAGTGGGAGAAGGAAGGATAAAGTGTAGAAAAACCTTGTACTTTATACAAGGGCAAAAGACAGCACGGATGCATATGGCGCAGAAGAGGAGGTGTGAAAAGTTAACTATCTGCAGACAGGGTACATAATCTGATATTCAGAGATACCCTGGGAAATACAAGTACTCCAGATCTTCCCAGATCCTTCACTAGCCCTGTGTTGGACGTAGCACACGTGACCACAATCAAGCTGAGTATTTCGGGAAAGTGGTACATCCTGGACCACTAGTGCCGAGAGCACTTTGTGAAGAGAACCCAGGTTGTAACAGCTTTGCTCCTCCTGGTCCAACCAGTTCAGCTCCTTTTCCTCCAACCATACTATCTGTGGTTATTATTTTAAAAGGCCAATTGATGATACTTTTAAAACACCCCAAATTGGTTTTGCAAATCTACACAAATTTTATACTTAAGCTGTATATTTGAAACATCAATTTTTTCCTTACACTGTTCATTTATTATACATCCTTTAATACTGAGTCTTATTTAAGTATTTACAGAGTAACAAGTATTTTCATGCCTAAATTTTCTTTAATTTTAATCAACCTCAAATATATTTTGTATTTCATTATTCAGCTACAATAGGCACACCACTGAAGGCATCTTTCCCTCTCTGATTGGTCTTATTATATGACCATATGCAAACTCTATCATTTACTACATGGTGAGTGTAAAACTTTTATTTTAGTGAGGGCTCTCATACATAGTGACATTCAGTCAGCATATTTATCTCCTATAAATAAGCTAGCCCAGCTAGTTGAGAGACCCAAAAGTTGACAAATGCAAATGTATATATTTTTTCTTTTCTTTTTTTTAAAAAAGCACATTATTTTAAAAGTAAAATATCCTGGCCCTTTAAGATGAGAGATCTGCTACCTAGAAACATTGCCTAGCAACAGGATGCTAGTCATGCAATGGCTTCTCTAAACTGGTGATCAGTTATTCTCCTGTTGGTGTCTCAGCTTGTAGAGTTTCTGATATGTTAACTTTTTGGTCTCTTGACCAAACATCTCATGACATTAATACTGTCATTGTATTAGGTTCCATCCAAGCAAAATTCTTCATGAAATGTGTCAGTATGATGTATGTGTAAATTTAGCTTGCTTTCTTCTAACTGGGCTCCAATAAGCCTTTTGTTTATATTAATATCTAATGATATTTTAAATGAGTTAATATGAATATTATAAGAGAGAACTGTCTTGACTCAAAGGCCGGGCAATGAAGTTGAACTGTCATTTGGTTATTATATGTTGATTATAAACGTGTCATTGATAAAGTATGTTTGTTATCTGTCTATAGAACTGTTTAAATTAAGAAGAAAATTAGTGTCTATTTTTTTCCACTGGGAGTCTGTGCTCTTTTGCCATAATCTATTTTAAATTTATTTCCTAGGCAGATACCAAAGTCATACTGCTTAATTCTCTTACCAATGGCCTATTGCTTGCTTGTTTGCTTGGGTTTTGGCGGGAGGGAAATACCCTGGATAGTAAGAAGAGGAAATACTTTGTAAATGTTAACTTCAATTGGAATAATTGTCATAAACAATGACTGAAATAAAAGATCTGAACCTCCTGGTAGGCACTGTCAAGGACTCATTTGTACTCCACTAAAATTTCAACCTGATACCGATTGAGCGCTTTCTCTGTTCAGACATTGTGGCAGGTGCTTTCAAACCACCTTCTTCAGAAAAGAAATAAAGACGCTTCTATTTTGAAGTTGACGAAGTCTAAATTTTAAATAAATTTCTGGTCAATTTCATTCCTAAGGTATATGGTAATTTTTCATGCCACAAACCTTCTATCTTTTAACTTTAATCTTTATTCTCGCTGTCTGTTGAGACATAGACCTACCTAGACAACAGTGACAGTGTTTGGATTTCTTTAATAGCAATGTGGGTGTTCTGAGTCTTGTTGGTAGAGAAGTCTGATTCTAGGACATTTTGATTTGTGTCAGGTAAACTAATCAAGCAAATTAAAATTAAATAAATCCCCAAGTTAGCCCTTTATTTTAAATTGAATTTGTTAAATACTTGTTAGCGAAGGTTCTCAAGATTAGTACAAGGGAAATGTCAAACTCTCAGCGACTCACAGAATTTGTCCTTTGCAGGGCCTCACAGTTGAGTCCTCTATCCTCCCAGGTTGTCCATTTGAGATACAGAATTAATGTGGCCCTATTACAAGTACAGTGTCTATTACCAAATATATTCTTTGAAAGTTGGCTGCCGTATATTCTCTCCACAAAGTGACCTAAGTGGTTGACCACCTTTGACCTTGAGCTGATGAGTCAGTAACATCAAAAAAGACATCCCGGGATAGCTTTGTTCGTGCATCTTTTAACAATTAAAGCAGCGAGAAAATTTCCCTATGTAATTTTTCTCCATTCGGATTTACTTCTTGCATGGACCCCACTCCCTGATGCATGCATTTTGCTTAGAATTTAGGAAATGGTTGAACCTGTGTTGATGGACAAGAGTTAAGTGATTTAGTTCTAATTGGCTGCTCACTAAAGAGTCCTCATACTAAAGACTTTATTAACCTTGTCGCCATTATTGTATTTATGGCCAGTCCTCAGGCTAAGTCCCCAAATGACTCTCCTTTATCTGCAAAGACCCTGATCCTAGAAGCGGTTGACCTACCTGAGACTGTACCTTCTCCAGCCTGTCCTAAAAGATGGATTTCAAATGTGATTCCAGAGCTCATCACCCCTATTGAGCACCATTCTGCCCCCATGGAATAATCGCTACCAATATCTTACCCTTCTCCCCGTAATGCCATCATTTTAAATGTGCACTTACAAACAAGGAAGAGCAACATTATACATGGCAGCTTGACCATTTCCTGAAAGATTAAAAAAAAAAGAAAGAAAGAAAAATACACTTGTGCTTCCTATTGTTACCTCCCCAAATGAAAACGTACTTTGCATCTCCAGATTTCCACCATTCCACCAGTTTCCCTCATATAAAACACATCTTCCCCAACTTAAAGACTGGTTCTTATGTGCCTTAAATTAAACCTGTTATCTTCAGGCAATTAGCTTACTTGAAGTAGGTTTATGTAATTCTGTCTGCATTTCCCAATTGGGGTGCACTAACAAATTATTTTGAATTCTTATGTTACAGGTAAAAACAAAACAAAACCAAAATTTCCTACCTAAATATTGTGCCTTCCCATATCACTCGCCACTAAATTTATATCGGATGTTCTGGTAAAATGAAAACCATCAATGAAAGACCAGATAAAACTGTCTGCAGCATTTTCTAAGTAGTGGCAATACCCTGGAGGCATTCAATAACATTATTAAAGATATTTGATTACTAATTGGGATTGTATATCACCATATAACTGGATACCTGAAGTGTTCAGAATGGGTTCCTAATCTTATAACATGACACTTAGCAAATGAAAATGGGGTTGCCTCTACTAATGCCGGTGTTCTAATTTAATTTGCTGAAACAAGAGTTTGTGGTCGGAAACAGAATCACATAGCTTCACGTATGTTATGATGGTTCTTCATGTTCTGCGCCACACGTTGACTTTAGCTCTGGAGCATCAGGCTGATATATCTATTTGTCAGTTCTATTTTGGAAATAAAGTTTTAAGCATGACAGTTACAAAAGGTGTTGAAGCCATTTCGATGCTATTTGTGGCCTGGAATCAACCAGATGTGTTTAGGCTTGGCAGTGGTTTCAAGTTCCAAACACTGGTTAGAAACTGCCTGGACTGTGAAAAGAAGTACAACGTTCTCTAGCTAAGGAGTATTTTAACACTCAACAAGTGGCTGACATCCCATAGGAAACTCTAGAGGGAAAACACCGCTTGGAGCTAGTTCAGACCCCATGAAATACATCTTTCTCGTTTGCATTTCAGGTGGTTTCTTCTCAAAGTTTTATTCTCAGAATCCAGTGACTGATAAGACACTCTTACCATCTTCTTGCCTCTATCCTGTTCTTTTCTAACGCGGCAGTTTGCTCCTGTTTGAGACTAAGCCTACTTTCAAAGCAGCTAGCTCATGGTGTGACATATGAAGCCAGTGATGGTGCCATTTCTATTGCTCTTACGCAAGTTCTTGCCTAAGAAAAAAACATAAGAAAGAAAAGAATTGTCTGGCGGTAAAATGTCGTAGGCCATTAGAAGTGTCTTGTTTCACGGGGCATTTTTCAGTTTGAGACAGTGACCAAGCCTCCATTTTAAGTTCACCTTCAGTAGCTATCTCCTTGGTTAACCAATCCCATTCATTAGCAATCTGATTATTATGAGATGAAAATGGACCCTCCTAACCGACTTGGGTTAGACCTGAGTGTGTCGATCTTTCAGCCATAAGCAGACATGCTTATGCCTGAGTCTGGACACGCTGACAGAATTCTTGGGAAGAGACTCCATGCCAAGCCACTAATCACCCTGTCGTCTTGTTCTTTCTCCCAG
Seq C2 exon
GAAAGAGACCACACCAGTGTCAGATTTGTAAGAAAGCGTTCAAACACAAACACCACCTTATCGAGCACTCGAGGCTGCACTCGGGCGAGAAGCCCTATCAGTGTGACAAATGTGGCAAGCGCTTTTCACACTCGGGCTCCTACTCGCAGCACATGAATCACAGGTACTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCGGCCGAGCGCGAGGCACGAGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACTTGCAGAGCATCACCCCTCAGGGGTACTCTGACTCGGAGGAGAGGGAGAGCATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAGGGCGAGGAGGGCTATGGGAAGCTGCGGAGAAGGGACGGCGACGAGGAGGAAGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACGGATCCCGAGACGATACGGGATGAGGAGGAGACTGGGGATCACTCAATGGATGACAGTTCAGAGGATGGGAAAATGGAAACCAAATCAGACCACGAGGAAGACAATATGGAAGACGGCATGGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004677:ENSRNOT00000006350:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.772
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.7),PF134651=zf-H2C2_2=WD(100=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]