GgaINT0046828 @ galGal4
Intron Retention
Gene
ENSGALG00000012440 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr7:32812269-32821326:-
Coord C1 exon
chr7:32821146-32821326
Coord A exon
chr7:32812847-32821145
Coord C2 exon
chr7:32812269-32812846
Length
8299 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCTCTTGTGTCTCCCCACAGGAA
3' ss Score
13.68
Exon sequences
Seq C1 exon
GGAGACTTGCTTGATGGAACCCCAGACTACATGTCCGGCCTCGACGACATGACAGACTCCGACTCCTGTCTGTCCCGAAAGAAGATCAAGAAGACGGAAAGTGGCATGTATGCGTGTGACTTATGTGACAAGACATTCCAGAAGAGCAGTTCCCTGCTGCGACACAAATATGAGCACACAG
Seq A exon
GTATGTGTGGCTGCGCTGCGTGTTAATGCCCTTCTCTGCATTTGATGCACGCAGTGTATGGATTGGCATAAGCTGAGGTTCTCGGTGAGGAAGGTGTGAAGTCTTTTCCTTAGTTTGACATTTATTTTTTTTTAGCTTGGTGAGGGACTGTTGAATTACATGATTGTGTCCTGGTATCTACAGACTTTGGGGTGAATTTGGCTAGCTGTGGATGCAGTGGCTATCGTGGCTCTCAGTGTCTTACAGGGCGAGGCCTCACGCTGCCACACACAAAGCAGGCCCTGGTGCTCAGGAAGAAGCGTACCTTGGTTGACACAAGTCTGGCAGAGGAAGGAATAGTGACATCAAATTCCTTGTTTCTTAGATGCTATCAGACCCTGTGCCATTTAATCCAGTAGAAAAACTCCCACTGACGTTAGCAGTGCGAGGGCTCACGCTGGCCCAGCTATCTGACAGCAAACAGGTCGCAGAGGCTCACACTGTGATTTTGCGTGCCAGCAGAGGAGGCAGGTTGCATTTCGCTTTTTCACTTCTCATTTAATGCTTAGGGAAGTTTTCCATCCTTCCCAAGTGGGAACTGAATTTGTCTAGTTAAAGGAAGCTTGCCAAGGCTCAGTGAGGATTGTCAGCATAGGAAATATTTTGGGTTGAGAAAGACCCGCCATCACACCTATGTTGGCCGTGGTCCTCCTTGCAGACAGCGCTCCCTTCTTCAGCATGTTTCTGTGAGGAGAGAGCAGGACTGGAGCTCCCCAAATAATAGAGATATCAAGTTATGCTGGACAAAGGGAATGTGAGTTATCACGTGAGTTATTGTGCAGCAGGACATAAACCAAACTCCAAGTTAGAAAGAGCTTACTCAGGAGGAAACTTTCCTTAACTTTGAAAGCTGAGTCCCGCTTCAGGAAATGAAGCAAGTCACATCATCCTTCAATCTCACCATGTGACGGTAAAAACCTTATACCTCTCTATTAATACATCTTCCGGGCTGTGCATAACCATTTAGCATTTCACATATGAAAAATTCACAGTTCGAAAGTGGACTGTGCCTTTAAAAAATTCTTTGCTTTGTTATTTTTCCTTCTCATACTTTTCTTCCAAATTTTAGGCTAATCCCATACAGGAAAATAAAAAAGGAAGTTAAAATACATGTGAGATTAAGAAAGAAAATTAAAAGCAACGTTTTGGACTAGATCAGCTAGTTCATTTGTGGAATGTGCTTCCCACCACATTATTCAGATCAAATTGTTTATTCAGTAGAAGAAGCTTTGAAGGCTTTACGTTCCTGCACCTTTCCTCTCCTGAATGATTTTATTACAGCCATCTGCAAGCATTATGGTGTACTACGCTACTACCGTAAAGCTCTTATGTTAGAACTGGCCTTCATATATGTTGGGATCTGGACATATGGTAGAATCCCATAAAGTTGGTAGTCCATAAGGTCGACAGACATATGGTTGAAAGGCTGAAAATTTGACAAGCTGAAATGTGTGCAATCACCTTGATTTGCAAAATAAACTGCATTTGTAAAAGCAAAAATATGTTCTGGTCCTTAACAACCACAGGAACCTACTGCCTTGAAAGACATCCCACGGCTCTGATTTGGGGACTCTTCTCCCTCTTCTTTCTGTCTCTTCTGGCTTCTTGACTGAATGTCTGTCAGTTTGATGGTCTCGGCCTTATGATCCAGAACATGTATATGGTGTCACATTTAATGCGCTAGAACTATAGCACACTACCAAGCTCTGGGCTGGCATTTAGAGACAGGAAGGATGGTCTTGTGGCAAAAGCACGGGCTGAGAGATCTGAGTTCTCGTCTGCCTTGCCACAGACTTCCTCTGCAAATTTTAGCAAATTGTTTCATTTTTCTCTCACCTTTGTTTATCTTTGAAGCAGAGGGAAATGATACCAGCCTACCTCTCTGGGGTGTTGTAATTCTTCATTCATGCAGACTGAAATCCTCCAATGGAGCTCGCTGTGTAAAGTGTGAAGTATTATTAAGGATGCATTTGCCTTTCTGGAGGCTCCACAAATCATCCTAGCGATAGGTAGAGGTGGTTGGGAGCTCTGAAGACCTTGGTTGGGCTAGCCTCCATAACAAATTCACAGCCTTCAGGAAGCACACGGTACTGGGACTTTTACTAATGGTTTAACATGAATCTTAAGTGGATTTCAAATTAACTTGATCGTTTTGGAAAAAGCTTGTGAATTCTTTAATAATGTGCAAAACTGCAGTCCACATCGAATGGAAGAAACCAAATTGAAAGTGATGTCATCTTCTGAGTTAGGGGTCATTGTGAGAGGAGACTCAGATTTTTCAGTCAACTTTTTGAAGCTTAGAAAGGTGACAAAGCTTTTCTCCCGAATGCATTCTGCTTTCTGACCAGCTGATCACGGTCCATTGTTACTTCATTAAAAACATATTTTAGGAGAAATTGGAGCCCTTCCTGTCTTTCCTGGAGAAGCACAAGCAGGGGGTTGTTTATCATGATGTCTTTTTTCCTACGTTAAGAGTCTGTATATATATACATATATATATATATATTCTTGTATGTGAGCAATCAGATTTCTGTTCGTGATCACTTTTATGCTCCACATACCTACTGCAACCCACGCTGGTGTTAGAGGAGTTGGACGTAGAGGCACACAATCCTGCCATGCAGCCCCTCAAGATTGTCCTCAGATAAATTCTTCAGGGTGAAAAGAAACGCTGACATGCAAAACTAAATGAGCTGCCCAAATTATGTGCTAATTGACTATTGTAAAGGACAAAATTGGGAGTACTGTAGGTGCTGTGGTGGAGTTGAGTTTCCCTGCCAGGGCAAGAAGAAGGGTAAGGATTTGGCAGCGCTTCGTCAGCCCAAGAGCTTCTAATAGGACCATGTGGCCACAGATCAAGGAACTCTCCATGATCACCTCTGTATGCTGTGCCTGCCACAGCTTGAGCACAGTGGAAAATGGGGTCCAAATTTTGCAATCCATAATTTGTAATTTATGCAGTATTAGCAGTGCTCTGTAATAGCTTCTAACTTCATGTGGAGAAGGAAAATTTATTGAGTTACTGCAATGAGTGAATTGCATTGGTTCTGGTTGATTTGAGTTTTAGTGTAGAGGCCAGTGCTTGCTGGGGGACCAAACTCTGCCAAGTTAATTTTGGGATGCCATGTCATTTAAAGAGAAGTTATGTGTCCATTTTAGAGTTTGAGATTCACAAGATCCTATTTCGTTAGAACCAGATGATGCACTGCTGTAATTAGGGTGTAGGCCATGGTAGGCAGCACAGGAAAACGGTGCTCAAATTATTTTCCTGTGGAGCCTCGTGAACCCATCCTAACTTTGGTCACACTGAAATCAGTTGAGCAGATACTGCTTCATTTGCATGTGTGTAATCTCAGATTTCTGCAAGCTGCTTAGCACAGAGTTCAAGACACTTTCCTGCTGCAGTGGGTAAGCAAGCAGGAGAGCAAACAGCGTGCAGCACCTCTATGTGCAGAAATAACCTGGCTTCTGAAGAGCAAGCCAGTCTGCCCTGTGTGGGGAAAGCTGACTCAGGAGCAAGGTAACGGTTAGCATTTGTTCTGCATCCTCACACCCGTGTCTCTGTACCCCAGCAAAGCCTTTATCGGCACTTCACAAGGGAACTTGCAGCCTGCCTGCTCCACAACAAAACCTGGAAATGGTTTTTCAGAATCCTACCTAGAAATTCTAAATCCTTTCATTGTTGTTCTATATTACATCATATTCTATTTTATTACTTGTGTGGGCTGTTGAGGGCCTCATAGCTGTGCTAGTGCTTTCATCCTTTCCTTTTCCACTGTATATTTTATTAAGACCTCTTTTTTATTTTTGTAGCTTTCATGCTGATGCAAGCACTAGTTTTATTTCCAGATTGATTCTGTAAACTAAATATTGTTCTTGAGCCTGGTAGCAAATCAGCTCTCCCTGGCTCGTATTTTGAATTCCCAGCTCAGGAGTTTTCTTTATTTAGAGCTTGATTCATAAAAAATTTACATGCTATTTAAAGGTTATTTTTTCTTGCTTTACTCTGATACAAGTTTAGATTTCCCCATTTTACACTCAAATAAAGGAAAAAAAAAAGAAAAAAGGGGATATATTCAGAGCTTGTGAAATTTGTTCTGTAGACAAAGTCTCCTATTCAAAATAGAACAGGTGCAGCTTGAGCAATTATATATAAATTGCCTTTATCTTGCACCTTTGACCACTTTGCTGTGTTCTGGACGCTAATCCAGCTCCACTGGGACCACATCTAACATCCAAACCCCAAGCAGCTTCAAAGAACCGCCTTTAAAAAATAAAAACAAGCTGTCACAAAAATGTTTCCTTCTTCCCTCCAAAGAGTGAGATTTCGATGGGCCCCCTCCCATAGCAAAAATACCCATTTGCTTTAGGCAAAGGATTGGTGATATTTAGTCTGGGACTGGTGACAGTTTATGATCTGATGCCTTATGACTTTTATACCACTGCAAATGGGAAACGTGTAGCCTTTCAGTCACATACTTTTAGCCCAGTAAGGTTGAGAGACACTTACTGCTAGAGATTATTTATATATTTATTTGCTTTACTTTAAGAGAGATATGATTTTAGAGACTTTGAGAAGCAATTGGTTGTAATTTCCCCTCTGTAACCTGAGCACGGGCCTCCGTGGGAATCTCTTTTTGCAGATGGTAAAATGGAAAAAAAATCCAAACATTTCCTTTAGGTATTAGAAGCGGATTTATCACCTAGTTTCACTGCAAAATGTGGTGTGTGCATCAGACATCCACCTGATGACACAGAAGTGTTTCATGAGCCCTCCTGCAAACTGCCTTGGGTAACGCTCTCCTTGGCTCCATCCCCTATGGATGACATAGGTCACCTCAGATGGGACTGAGCAAAACTTTTAGGGGGGGATGATCAAATCTGCTTCTTTTTGACCCATCTCTATTCCACTGTTGTTTTGATGTTGAATGATGGCACTCTTGTTGGGTGCAGCAGAGACTGCCTACGATGTCCCCATCCACCTGCAATGGGATGCTTCTCCCTGTCTGCCTACAACCATAGACATCTCTCCATCCCTAGTGTAAACCACCTTAATGCAGCTTTATTTTATGGCCTATTAATGCATTGTAGGGATTAGGTACCTCTCCTAAATGGCTGAAATACTGTTTTTTGCACATGGGAAAAAATTCTTCTGCAAATGTTCAGAAACGTGATACATTTAAAAACGTATTTCAATTAGTGTTGTAACAGCTGCGTGCTGTGCACTGCTAAGGTATGTTGTGTGGTGTCGGAACAAAGAACTTTGCTCAAGCTGTCATGTTCCCTCAAATCAAAACTAGACAGTTCTTAATACGGATGTGGTAGACTAAATAGCTCTGATATAGCCTCTTTAGTGACAATATAAGTCAATATGAAAACACGGAGTATTTTAATCTTCTGTCTTCTGAATTAATTTGTAAAATATAGATGATCACCTGTGCCAGGGAAGCCTTAGGTAGCGCCATCAGGAGTGCAGTCCTTGGTGAACATCATAGAATCATGTGCAAAGTGTGAGGAAAGCAGGCAAGGCAAGAGGGAAGAGCATGTGAATTCACTGGAGGGTGGCTGAGAAGCAGGCTTCCATTTGAGGAAAGGAAAAGTGCTGGGCAACTAGTTGGAAGGAAGGGTGAAGATGGAGAAATGTGGACTGAGAAGGGTTCATGGTGATACTAAAAGGAAATCTGAAGTAATGGAGAAGGAGTGACATTGAGAAGTGGAAGAGCTCTCACCGCAACCGGGGCTTTCTCCTGGCAGCACTGGTCTTCAGGGAGTGCTTAGATCAAGGCCACTTTGGGATTTTAAGCTAATTTGAGTAACTGACTCGATGGTGCTAAAATCTTCTAAGCTCAGGCTGGGATTTCCCCGTTGGAACAAAGGTGGTGCTCAGAGTCACAGGACAGCTGCTCCTGGCCCTGGGTTCGGTGCAAAGCCAGAGTCAAGTATAGCTCAAGGCCCAGACCTGCCTTGTGACCAACAGGTAACAGTGGCAGAAGTGCACATTAGGAAACAGATCACAAAAGCAATAGTGCAGTAACTCAATATAGAGAGCATGAATTTTTAATTTTGTTGGAAAGGGGGGAGGGCCAGAGGGAACTAAAACCCAAGAAAATCTGCATGTATGCAAATGCAGGAAAGTCTCATACGAAGAAATGTAGTTTAAGTCCCAGTTTCCAGGCATCCACCACTTTCTCTGTCACTTAGGTTTTTCTGTCTGTGGTTTCTCCTGTGTTTTCCCTCCTGCCAGATCTCCCCTTCATTTCAGAACATACAATTTTTGGCTTCCTCGAGCATTTGTTAATCACACCTTATTAAATGTGAACTTTCACAGTGGGACCCAAGGGCAGCTGTGACTAGATCGGGCAAAAAATTAACATATTCCCTGCTATTCATTCTTCACAACTTTGCCATGGAAGTGAAATTATTTTATGCCCGACTGTTTCTGCTCTCAAGTCCCAGCAGTGACTGCAAGTACATCCAACTCATAAAGGGGTTATCCTGGAAGTCAAGGTCCTTCAGTAGTCTGGAAACATGTTTCTACTTCCTGCTGGATTTCCTTCTCGGCCAGTGATGGCCTGCTGTCTGCCCAGCCCTCAGCTCTTGGCTGGAGGCCTCTTGCTGACTGCCCACCCTACTTCGCCGTCGCCCCTCCTCTTGCATGGCTGGAAATGTGTTCCTCTGGCCAAGCATCCAGTCATGATTCCCGTCTTTCTCTCTCTCCCTGCTCTGTCTTCTTACGAGAATTAAGAAAATACCACACTTGTACATCTGACAGGATGGGAGGGCTCTTGTGTGAAGTTTATTCCCGTTCTGGTCACATGCCACATTAGCTAAGTATGATAAATATTCCCGAGGAGTCAGGCCACTTCACTACTAACTTTCTAGTGATTGGCTCTAACAACAAGACATGCAGCGCAAGGCTCTGCAACACACTGAATACTGCATTTTTATACATGTAAAAGTAGCACAAAATATAAAGAAATGACCAATTGGCATTGTGTCTTGTTTGCATAGCTGCACACCACCCTGAAGCACGCAGTTGAGTGACACTGAGATTATAAATTGACATTTTGAAAATCAAAAATCTGGCTGAAAGTACTGATGTTTGACTTTACTTTTTGCCTTCTGCAATCTAAGTTTGGTGATTGGTCTTCACTAATTCCAATCTTTGCACCATATGTTATGTCTGGATATCTCACGGTTGCATCATGCTTTGCTGAGTTTTGTCGTGTGGCATCATGCTGACAAGTATTTTTTGTCAGCTCTATTTTGGAATTAAGCTTTTCAGTATGGCAGTTCTGGAAGGTGTTGAAGGCATTCCTGTGCTATTTGTGGCCTGGGATCAACCAGATGTGTTTAGGCTTGGCACTGGTTTTGAGTTTCAAACATTGGTTTGAAACTGCCTGAAATGCCAAAGGAAATACTGTTTTCTGCAGCTTAACACTACTTTAGCACTCCGTGAGTGGCTGACAACATTTTATTTAGAAACCCTTCTGCTCCTGTGGCAGATGTATGTATTTGTATTGCTCACGAGGGGAGAGATGTCTTTCGGTCCTTGAGGTGGATGGAAGGGTCTTCTTCCCCCACACATGGGTGTGAGGAGTGGAGGCTGCAGTGCTCCCATGTCCAAATGTGTTGGTGTGGCTTCAACCTTGTTCCTCCCTGATTGACTCAAGGAGCCCAGGCCGGACGTGTTGCTGTTGCTAGATGCACTGTGTGCATTGAAGGTAGACTCCAAGGCCACCAGCCTTGGTGTTCTCCCCATGGTGGAAAGCCGTTGGCTTTCTGCAGCATCTGTGGCCATGCTCAGAGATGGGACGGGGGCTTCTTGCTGTTCATAAGGATGTTCCCAAATAAAACTTTAAGAAACAAAGCTCTGTTCCACACGTTAATCTCTTTAGCAAGGGGGGAAGAAATACGGCGCGCGTATGATGCTGTCAGCAGAATTATTTATAAATAGGGATATTTTTTGAGCATTTTCATGGGTGTCAGCTGCTTGCTAGAGCTGCCAGTTTTCCATTGATGTTCTCTGAGTCATTTTCTTTATTATCCTGAGCTACTTGAGTAAAATTACTACAATCAAAAGCATCCAAAGCTTAAGTAGTAACATAAATGTGGGTTTTTGCTGTTTGTTTCTGCAACTGAGCTTTAAGAGGAAGAACAAGTGGGGTTGCAGTGTTCCTGGAGCACCTTGCAGCACATGGAGGCGGTGGGCTCATCCCTACCACTATAACCCCTCTTGTCCTCTTGTGTCTCCCCACAG
Seq C2 exon
GAAAAAGACCACACCAGTGTCAGATTTGCAAGAAAGCATTTAAACACAAGCATCACCTGATTGAGCATTCACGCCTGCACTCTGGGGAAAAGCCCTACCAGTGTGATAAATGTGGCAAGCGCTTCTCCCACTCCGGGTCTTACTCACAGCACATGAATCACAGGTATTCCTACTGTAAGAGAGAGGCAGAGGAGAGGGAAGCGGCCGAGCGGGAAGCCCGTGAAAAGGGTCACTTAGAGCCCAACGAGCTACTGATGAACCGGGCCTATTTACAGAGCATTACTCCCCAGGGGTACTCTGACTCAGAGGAGAGAGAGAGCATGCCGAGAGACGGCGAGAGCGAAAAGGAGCACGAGAAGGAAGGGGAAGATGGGTATGAGAAGCTGGGAAGGCAGGATGGGGATGAGGAGTTTGAGGAAGAAGAGGAAGAGAGCGAAAATAAAAGTATGGATACGGATCCAGACACGATAAGAGATGAAGAGGAGACTGGTGATCACTCAATGGACGATAGTTCGGAAGATGGGAAAATGGAAACCAAATCAGATCACGAAGAAGACAATATGGAAGATGGCATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012440:ENSGALT00000020339:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.766
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.8),PF134651=zf-H2C2_2=WD(100=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]