DreINT0177822 @ danRer10
Intron Retention
Gene
ENSDARG00000078416 | zeb2b
Description
zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
Coordinates
chr6:1151183-1160055:-
Coord C1 exon
chr6:1159875-1160055
Coord A exon
chr6:1151380-1159874
Coord C2 exon
chr6:1151183-1151379
Length
8495 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
GTCGTTGTGTGTTTGCGCAGGTA
3' ss Score
8.55
Exon sequences
Seq C1 exon
AGCGAGCTTCTTGACGGGCCGGCAGATTATCTGAGCAGTCTAGATGATATGGCCGACCCCGAGGCCTGTCTGTCCAGGAAGAAGATTAAGAAAACAGAAAGTGGTATGTACGCGTGTGACCTTTGCGACAAAACATTCCAGAAGAGCAGTTCCCTCCTCAGACACAAATATGAGCACACAG
Seq A exon
GTATATATACTGTTCTAGACACCATCATTTAATAACTGTCTGTCTACCTCCAGAATATTCACGCTGCTGCTGCCTGCTTTCTTCCTTCCTTTCGCTCTGTCCCTTTTTTCCTTCATGTTTTCTTTTACTCTTTAATCTTATTCAATATACAGTGTTCAGCCCTCACTCTTTTACATCAATATTCTCTATAGCGTGAAGTAAAGATAATAATTAAGGCTAATGAAATACAGTTAATTAAATAAATTATCTATCACTTTCTATCGCTCTGCCTTTTTTCATGTTTTTTTTCCTTTCTTTTTTTTTTTTAGATCTAAACTAACATGCTTCTCTCTTGTTGACAGTCAGTGAGAGGATTCGTTAATGTAATTAGTGTGACATGACACTGCTTTAAAATAAAGATATTAATTAGGACAAATTAAATAAATAAAGTGATTGACTAAACAATCTCTGGAATTAAAGCTGGTTTAATGTCTGACAGTCAGCAAGAGCTTTCATATTTACACTGTTAGTAGAGGCTACATTCACACATTAGTATTTATTTATGTTTGTGTATATATATATAGATATTAGAACTATTTGTATTTGTTTAACACTGACCTGTTTTTGGATGGCTGTATGAATAGGAAATATCACATTTCTTGGTTCATATGTTACAATAAAATAAAATAATTTCGATTAAAACTAGCCACTTAGGATAAAAATAAATGTAAAAAGCAACATTTCAACATTTTTCAGTATATTTATTTTTTAAATACAAAATAATTAAATAACATTATAAGTAAACCTCAAGATTGAAGTTGAATTATTTCCAATTCTATACAATAAAAAAAACTGTGTCTTTTATCTGACAATCCTTAAAGGACCCTTAAAACAAATCATTTTCAATAGAAATAAATGCCAACATAGAAAAATCAACATTGTAATATTTTTCAGCATAAGCTTTTTTTTTTTTTAACTTAATAAATAAATAAACTTAATAAAATAATAAAATAAAATAATAAATAATAAAATATTCATTAAATTAAATTAAATTAAATTAACAAACAAACAAATAAATAAATAAACTTCAAGGCTGTTTACTTACAATCCTTTAAAATAAATAAATAAATAAATGAATACATGAAATGAAATGAAATAAAATAAATAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAAATTAACAAACAAACAAACAAATAAATAAACCTCAAGGCTGTTTACTTACAATCCTTATACTTTAGATAAAATGTTTTATTTTTTAATCAACATTCTAATCTTTACAAAAAAAAACACACATAAAGAAAAAATAAATAAATGAAATGAAATGTCATAAAATAAAATAAAATAAAATAAAATGTCATAAAATAAAATAAACAAACAATCAAACAAACAAGCAAATAAATAAATAAATAAATAAATAGATAGATAGATAGATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGCATTATAAGTGAACCTCGACAAACATGTCCTGACCCTCTTAAACTCAAAGAATAAAATACATAGCACTTCACACACACGTGGGGTGTGTAAATACACTGATAGTGTTGAGATGGATGAAAGAGGAGGGTGGAGCGGCTCTAGAGCTCCATTCAATATAGTGGAGGATGTAAAGTTCTAATGCTGCTGCAGACATTGAGTTCCAGAGTCCAGCCAGTGGAAATAACAGAGTGAAATTAAAGTAAATTTAAGGAGGAGAGCAACTGCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACTTGTTTCTTTCTCTTGATTGCATCACCATTTACAGTCGGTGTGGAAGGACATGGGAATGAATACAACTTTCTTTATTTCCTTTCTCACTCTCGCTTTCTCTCTCTGTCTATCCATCTATCCATCCATCCATCCATTACTCTTTTAATCTATTTAAATCTCTATCTCTCTTTCTCTCCCACTCTATCATTCTATCTCTCTTGTTTGTGGTCAGATCAGCTGCGTGTGTTGCAGTGTAAATGCAAAGCTCAGACTAGCCGATATACAGTCACTTCAGCAATTAATTTCCCAGCACTGCTCTGCCTTTTGATGACATATTAATCTGCATTTTGATTTTATAAGAGTTTGCTCTTATTCTGTTTTCTATCAGAGGAATCATCATTTAACCCAAGGCTAGACTTTAAATCTTTAATGCGAGCAGTGAGTTACAGAAAAATCTAGTTAAAGCAGTGTTTTTATTTATTTGCACTCATTTATAGTAATACAAAGCAATATTTGCATCATATCTTTATTTTTTGGATGAAATATGTACTCACTAAATTTGAATTCATGCATTATTCATAGCTAACATATTTACCGGTCAAATACAAGGTGTGTCAAAATGAGCACAATACACATAATGAAGCATGCAAACTCATCACTGATATTCAATATACAGCGTACACCCCTTGCCGATCTCTTTTGAATTAGTATTTTCTACAGGAGACTTTACAGTAATATATTTATGCATGTACATTAGATTAGCAAAGATAAAGCTGGAACTAATCTATAACAAAAAACCTAAGATCATGGTGCAAAAATTAGTATACCTAAATTAATACACCAACCGGCCACTTTATTAGGTACACTGTCCAACTGCTCGTTAATGTAAATTTCTAATCAGCCAATCACATGGCAGCAGCTCACTGCATTTAGGCATGTAGAAATGGTCAAGACGATCTGCTGCAGTTCAAAATGAGTATCAGAATGGGGAAGAAAGGGGATTTACTGAACGCTGCATGGTTGTTGCTGCCAGACGGGCTGCTCTGAGTATTTCAGAAACTGCTGATCTGCAGGAATTTTGACGCACAACCATCTCTAGGGTTTACAGAGAATGGTCTGAATAAGAGAAAATATCCAGTGAGTGGCTGGGCTGTGGGCGCAAATGTCTTGTTGATGCCAACTCTGTACTTGTAAGGTGTACCTAATAAAGTGGCCGGTGAGTGTATGTCAAGGAAAAATATTCAATAAAATTTTAATAAACAGAAAAAACCAAGAGACACATAAAAACTGCAAACATTTTTTTTCTGAAATAACCTCTTAGAATTGAAGTGTTTATCTTTCTATTCCTACAGATGTTCGGTGACCAAACTTGTTTTTTAATAAACATAACATTTTAACAAAACTTGTTTAAACACACCAACAAATATTGCCTAAATTCACTGACATTGAAAATATATGCATAAATATATAATCATAAAAAATACATACTTTTTTAAAGCATGCATACTCCTTTTTGAGCTCTGCATATCATGCATGACCAGTTTAAACACACCCAATAGTATCTGCATGCAGCCTTTATGATGTAAGACTGCATCTCTCAGTGATGCAACGTCAGACACAGTGCACTCAATGGAGCTAGTGACGTCACTGTGAGGGTTAGGGTGAGGTGAGCCCATTTAAAAGCATTGGATGCATCTCAACACACCTGCATCATCATATAGTGTCAGAAATGAATGTTTGTTAATAAAAAGCGGTATTATCAGAGGTATTATTCACTGTACACAACCACAGAATATAGTGCATGTTAATAAATTAACTCTATCCCCAAAAACATACTATACAATCAAAGATAATATCTTAGAATAATGCTCCATTAGTTTACTAACATTAACTAAGAGTTTAAGCGTTTATCAATTATAGCTCAACATTAACTAATGCATTAATGAAATCCAGTGCACTGTGAGTTAGCATGAACTAACAGTATTACACTTTAATAACATTAACAAAGTTGAATATATTCCATAGTGAATGAATTATGTGTTATTAATTATAAATGAATTGTTTATATTAGTAAATAAATTAACTAACAGAGCATTATTTTTAAAGCGCTACTCAATCGAATATAAAATGCAATGCACAAATATTCCGGCATGTAAACGTCGAGCTGGAATGAATTGTTCACGGCTGTTGGATTATCTCTCAGCTGTTCTCCGTCACAGTGCTCTGATGAGAAATCAGTGGATATTATGTGTGTATTGAACAGGGCTCAGTGTGAGAGCGTGAATACAGATATCTGACAGCCACAGGTCAGCAGAGACGCTCCACTGGCCTAGATGATCAAATCTATCAGATATTACATAAAGCCTCTGCACTCTGATATCTGGGACAGTTTTGTCACTGATCGCTTTTTTTTCTTCTTCTTCTTTTGCCTGAAGCACCTGTTCATTTCTGACCGCAGCGACTCTCTCGCTCTTTCATTCATCACATTTCTCTCTCTCTATCGCTGCGCTGCTCTTCTCCTTCATTTTCTCGTGTTTTATTATTTTAAAAATTCTATAATTTTTCTTTTTGTTGTATTCTTTATTTTCTTTTTTATAACCTTTCTTTTTTGTTCATTAAATTTCTTCTTATAAGTTCTTCTCTTTTCTTCATTTTTCTTTTTCTTCATTTTTTTTTCTTTTATGTTCTTATAATTTCTTCTCATTTTATTTTATTTTATTGTTTATCTTCTCTGCTTTTCTCATTTTTAAAATAATTTTTTATATTTTCTTATTTATTTACATTTTAAATACAATTTTATTTTATTGTTTTCATCAATTCTCTTCTCTAGTCTGTGCTCTTATATATGATATTATATTATATTAAATTATATTAAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTAAATTATATTATATTATATTATATTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTATATTAAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTAAATTATATTATATTATATTATATTGTATTGTATTGTATTATATTATATTAAATTATATTATATTATATTATATTATATTATATTATATTATATTAAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTAAATTATATTATATTGTATTATATTATATTGTATTGTATTGTATTATATTATATTAAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTGTATTATATTATATTATATTATATTATATTTTCTCTCTTCTATTTTAATTTAATTTCAGGTTTTATTTCAGTCATTTTCTCTCTGCTTTTTTGTCTTTTTTCTTCTTTATTTCTGTTCTCTTCTCATTTTTCTCTTCTGTTTTCTTTACTTCTCCTTCTTTTTCCTCTTAATTTTTCTTTTCTTGATTTCTTTTCTCTTTTCATTTCTCTTCCCCTTTCTTCTTTTTTCCCGTCTTTTCTTCTCTTCATTTCTTTTCTCTATAATTCTCTTCTCTTCTCATTTCTTCTTTTTGTCCTTTACTTTTTCAATATTTCTTCTCTTCTTTTTTAATCTTAATTTTTCTTTTCTTCATTTTGCTTTTCTTCTCCTTTCTGCTCTTTTTATATTATTTTAATTTCCTCTCATATCGTCTCGTCTCAACTCTTTTCTTCTTGTCTTGTCTCTTCTATCCTCATATCGTCTCATCTCTTTTCTTTTCTTTTCTCTTCTCTTTTTTATCTTCATTTCATTTTTCTTCTCTTCTTTTCTCTTTTCTTCTCGTCTATTCTCTCCTTGTCTCATCTCATCTACTCTAATCTCTTCTCTTCTCTCTTTTCTTCTCATCGGTTCTCATTTCTTCTCTTCTTTTCTTTTTTCTTCTTGTCTATTCTCTCCTTGTCTTTTCTCATCTCATCTCGTCTCCTCTTCTCGTCTTTTCTCTCCTTGTTTCATCTCATCTACTCTAATCTCTTCTCTTTGTTTCTTGTCTCTTGTCTTTTCTCTTCTCTTCCAGTCTCCTTTTGTCTCTTCTCTTCTCTCCTCTTTTTCTTCTCATCTTGTCTTTTCTAGTCTCTTTTTGTCTATTTTCTCCTCTTTTCTCTTCTCATCTCGTCTCTTCACATTTCTCATCTTGTCTTGTCTCTTCTCGTCTCTTGTCTCTTCTCTACTCTTTTTCTTTTCTTTTCTCTTCTCTTCTTCTCTTCATTGTTATTTCATTTCTCTTTGTCTCTTCTCTACTTTTCTCTTCATCTATTCTCTCCTTGTCTCATCTACTCTTATCTCATCTCATCTCATCTCTTCTCTTTTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCAGTCTCTTTTTGTCTCTTCTCTTCTCTTCTCTTCCAGTCTCTTTTTGTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCAGTCTCTTTTTGTCTCTTCTCTTCTCTTCTCTTCCAGTCTCTTTTTGTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTTCTCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCAGTCTCTTCTCTTCTCTCCTTTTCTCTTCTTTTCGAGTCTCTTTTTGTCTCTTCTCTTCTCTCCTTTTCTCTTCTCCTCTAGTCTATTTTGTCTCTTCTCTCCTCTTCTCTTCTCATCTCGTCTAATCTCTTCTCTTCATCTTGTCTCGTCTCTTCTCTTTTCTTTTCACCTCGTCTCTTCTCGCCTCTTCTCTTCCCTCCTCTTCTTCTCTTCTCTTCTTCTCCCTTCTCCTTCTCTTTATCTTTATTTCACTTCTCTTTGTCTCTTTTCTTCTCACTTGTTTTCTTTATTTCTCTTCTCTTCTCTTCATTTCTCTCCTCTTCTTCTTCTTCTCATGTCTGGCTCAGGGTCTTTCCTGGTGACGTCAGATCATGTCACTTCACCTCATGCGTAACGCAGCGTTAAACTAAAAAATGAAAAGGAAAAACAGAGAGAGAGAGAGAGTGTCGCGCAGCAGGAAACTGCCGTTGGATTTGAGTCTGTTTGTTTGTTCCTGCTCCAGCTCTGTGTGTTTGTTTGGTTTGCGATGGTTTATTTATGTGTCAGTGTTGTAGCGGAGCGGCTTCACGCTTCACTTCTGTGAGGGAATGTTATAGAGTAAATACACAGACTGCAAACACTCCACTGTACTCCATCATTTTACCTTCTTTTTCATCTCTGATGTTTGTTTTGTTTTGAGTGCTTGTGTGTGTGGGTGTTTGTGCATGCACATTGTTTTTATATCCCTGTGGGGACTTAAACTTAAATGCACACAGACTCATGGGGACATGTTCAAGTATTTAAATATGTTTAATTGCATTTCAAGTATTTTGAACATGTATAAATGCTGAATATTTTCTGTGAGGCTTGCACAGAATGTGCAGTGAGTACAGTAGAAGCATAAAATATTAGTTATATATTAAAATTTACACTTAGAATACACTTAGAAAGTTACTTTATAAGGAAAGTAATGTTCAAGTCTTTTGTTAAATCATTAAATATTTTCTATAGGACGCTTTACAATATTATATTTGTGCATATGCATTATTTTAGTCAGTACTGAAGCAAAATCCGAAGCTAATCTAACAAAATAATTACGATAATGGTTCAAAAATTAGTAGCCCAAATTTGCATGTTAGGGAAAAATATTAACATTTTCAAAAATGGCAGAAATCAAGAGAAAAAAAATACATACAATTTTGTTTAAATTTTGTAGTTTAATTTTTTTTTGCAATATTTTGCATGAAATTAAATGTATTATATTTCAATTTCAAAAGTTGTTCTGTGACTAAAATATTATTTTAATAAAAAAATCTGTTTAATAAATCTATTTCCCAATTACAGCTACAGAAGGTCCCCACGAGGATGACAAACCAGACTTGTGTGTGTGTGTGTGTGTGTGTGAGTGAGTCTGTATGTATGTGTATCTGTATCTTGTGTTCATCACATCATGGAGACCAAAATGTCCCCACAAGTATAGCAATACCAGTAATTTTTCACCTTGTGGGGACATTTTTAGGTCTCCAATAGGAAAACAGCTCATAATTTACACAGAATGACGTATTTAGACAATGTTAAAGTGCATATAGTTTCCAGTGAGGATTGGGTTTTGGACTTTAGGTCATATTATTATATAGTTTATGAACAGAATATAAAGTCTGTACGGTATAAAAAGCTTTACGTCTATAGCAAGTCCTCATAAAGACTGCTCTACAAGTGTGTGTGTGTGTGTGTGTGTGTGTAAATAGTTCACTCACTCACAGTGTTCGCTCTGTCGTTGTGTGTTTGCGCAG
Seq C2 exon
GTAAGCGGCCGCACCAGTGTCAGATCTGCAAGAAAGCGTTCAAACACAAACACCACCTAATCGAACACAGCCGCCTGCACTCCGGGGAGAAGCCCTACCAGTGTGATAAATGCGGGAAGCGCTTCTCACACTCGGGCTCGTACTCTCAGCACATGAACCACAGATACTCATACTGCAAGCGGGAGGCAGAGGAGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078416:ENSDART00000090019:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.236
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=22.7),PF134651=zf-H2C2_2=WD(100=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]