BtaINT0165607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014123 | ZNF507
Description
Bos taurus zinc finger protein 507 (ZNF507), mRNA. [Source:RefSeq mRNA;Acc:NM_001206198]
Coordinates
chr18:43067681-43068295:+
Coord C1 exon
chr18:43067681-43067815
Coord A exon
chr18:43067816-43067937
Coord C2 exon
chr18:43067938-43068295
Length
122 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
AGTGTTTGATGTGTTTTAAGGAT
3' ss Score
6.3
Exon sequences
Seq C1 exon
ATGCTCATTGTGTGGGTATGTGTGCAGCCATCCTCCTTCTTTGAAGTCTCACATGTGGAAGCATGCCAGTGACCAAAATTACAACTACGAACAAGTGAACAAGGCTATTAATGATGCAATTTCACAAAGTGGCAG
Seq A exon
GTATTTGATCTTACTGTTACATATAAATAAATTACTGTTGCATATCTATATATTTTCTGTAAAGTTAGAGTTAAATCTACTAGTCTACATTATAACCAACTCAGTGTTTGATGTGTTTTAAG
Seq C2 exon
GATTCGGGGGAAATCCTCTGGAAAGATGGTATTAAACAGCAATGAAGAAAGAGCCGATTCTCTCACTTCTGGAAGTTCAGAAAATTTGGTGTCATCCTCAGAGCTGATTCCCCAGGCTCCCAATGAAGTCAGAGGTCCCAACGAGAATGAGAAGCTAAGCCCTGCAAGTAATACCTCAAAAAACTCCAGTCTGGCCCCTCCTGGCGTGGAGTACTGTGTTCTACTCTTCTGTTGTTGTATATGTGGTTTTGAATCTACCAGCAAAGAGAATCTCTTGGATCATATGAAAGAGCATGAGGGTGAAATTGTAAACATCATCCTGAATAAGGACCACAACACAACTCTAAACACAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014123:ENSBTAT00000018782:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.630
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTGTGCAGCCATCCTCC
R:
CTGACTTCATTGGGAGCCTGG
Band lengths:
252-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development