RnoINT0168295 @ rn6
Intron Retention
Gene
ENSRNOG00000013565 | Zfp507
Description
zinc finger protein 507 [Source:RGD Symbol;Acc:1307017]
Coordinates
chr1:92089674-92091400:-
Coord C1 exon
chr1:92091266-92091400
Coord A exon
chr1:92091156-92091265
Coord C2 exon
chr1:92089674-92091155
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
ATATGTTCTGTTTTTATAAGAGT
3' ss Score
5.27
Exon sequences
Seq C1 exon
GTGCTCCTTGTGTGGGTATGTGTGCAGCCACCCCCCTTCCTTGAAGTCACACATGTGGAAACATGCAAGTGACCAGAACTACAACTATGAGCAAGTTAACAAGGCCATCAACGATGCAATCTCACAAAGTGGCAG
Seq A exon
GTACGTCATTCCACCCTTCACTTGATGGCTTGGTATAGAGCAAGGTAGGGAGCGTCTCCTAGCCCTACAGCAAAACCCACTGAAAGTCTGATATGTTCTGTTTTTATAAG
Seq C2 exon
AGTTCTGGGGAAATCCCGTGGGAAACCGCTCTTAACCAGCAGTGAAGAGAGAACTGGCCCTACCACAGGCAGTCCAGAAAACTTGGTGTCCTCCTCGGAGCTCAGTTCCCAACTGCCTGGTGACGGTATCGACGCCAGCGAACTTGAGAAACTGAACCCCACAGGCAGCAGCTCTGACATCTCAGGAAGGAGCTGCAGCTTGGCTACTCCAGGCACTGAGTACTGCGTGTTGCTCTTCTGCTGCTGCATCTGTGGCTTTGAGTCAACCAGCAAGGAGAGCCTCCTGGATCACATGAAGGAACATGAGGGGGAGATTGTCAGCATCATCCTGAACAAGGACCACAGCACAGCCCTGAATGCCAACTAGCTAGGAGCATGTGGGAGGGCCACTCTGAACCGCAGCTTACCCTCAGCGCCATCACGAGCTCATGAGACATGGAAGAAGCGGTGGTGTGGGTGATATTCGGTGCAGAGTAAGGAGACAGAGCTATAACCCTGTGTGAGCCCCTGGTGCCCCCTTGGTAGTGTCACTGTTTATTGTTAAAAGCAAGCAAGCTCTGCAGAGCCACACTGGTCAGCTCTACAGTGGCCGGGCTCTGATGAGGAAAGTGGCAAATGGGAAGGGGCAGTTCCCACTGTTGCCAGGATGGGCAGTAGGGAGAGGGAGGGTAACTTCCCTGTCTCCAGAGAGCAATGGAGTGAGGAATGGGCTTCATAAACCTTTTCCTTGTGTTGATAGGGATTCATCACAGACTCAATGTAGGGCGTGGTCCTTCACTCCCTAAAAAAGAAGAGAGATACCCAAATCACTCCTGGATTATAAACATTTGGGAAGTAAATTATTGTTTCAAATTCACAGTGACTCCACACAAGACTCAGACCAAATTTCAGGTTCACAGAAATGGGTGATTGATTTCTCAGAGGTCAGTGTGAACAAACAGAGCCCACTTCTCCAGTTACACAGCTCCACACACCTTCACCGCCAGCAGTAGTCTGACGGCCTCCTCAAGCAGGACGGAGACTACTACGCACCACCGTCCTTGAGCTGGGTGCTCACCTGCTACCCAAGCACACTGTAGCCTGCGAGGCAAAGGAAGAAGCTCTGGGGAGGCTGGGCGTGGTGGGGCAGACTAAAGTCCACAGGTGTGGCTTCTGAGCAGGGACTCCAGGTTTGAGGCTAACCTGGGTTAGCAGGACTGGGCCTCCTGAGGTTAGAAAGATCACTTGGAGAATGAAAGCTGAAAGTCAGCTGCCTCAAAAGTAGCACATCTGTTAAGGTTTTCTCTACTTAGACTTTATGAGTTTGGTTATATTTAACAGAACAACCCAGGTGACTAAAGAATGGTAAAACTTCAGTCTGTTTTAATAAGAGACTGGTATAGTTCACATAGTCAGGAGGCAGTGGATTTGAGAGTTTGAGGCTAGCCTGGTCTACATAGCAAGTTCCAGGCTAACTAAGGCTTCAAAGTGAGATCTTGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013565:ENSRNOT00000018153:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(38.5=21.7)
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTGGGTATGTGTGCAGC
R:
GATACCGTCACCAGGCAGTTG
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]