MmuINT0179346 @ mm10
Intron Retention
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:35772343-35776572:-
Coord C1 exon
chr7:35776438-35776572
Coord A exon
chr7:35776328-35776437
Coord C2 exon
chr7:35772343-35776327
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
ATGTGTTCTCTTTTCATAAGAGT
3' ss Score
4.92
Exon sequences
Seq C1 exon
GTGCTCCTTGTGTGGGTATGTGTGCAGCCACCCCCCTTCCTTGAAGTCACACATGTGGAAACATGCAAGTGACCAGAACTACAACTACGAGCAAGTTAACAAGGCCATCAATGATGCAATCTCACAAAGCGCCAG
Seq A exon
GTACGTCGTCCCACCCTTCACTTGATGGCTAGGTACAGAGCAAGTTAGGGAGCATCTCCTAGACCTACAGCAAAACCCACTGAAACTCTGATGTGTTCTCTTTTCATAAG
Seq C2 exon
AGTTCTGGGGAAATCCCGTGGGAAACCGCTCTTAACCAGCAGTGAAGAGAGAACTGGCCCTACCACAGGCAGTCCAGAAAACTTGGTGTCGTCCTCAGAGCTCACTTCCCAGCTGCCCGGTGAAGTTATGGACGCCAGCGAGCTTGAGAAACTGAACCCCACAGGCTGCAGCTCTGACGTCTCAGGAAGAAGCTGCAGCCTGGCCGCACCAGGCACCGAGTACTGCGTGTTGCTCTTCTGCTGCTGCATCTGCGGCTTTGAGTCAACCAGCAAGGAGAGCCTCCTGGATCACATGAAGGAACATGAGGGGGAGATCGTCAGCATCATCCTGAACAAGGACCACAGCACAGCCCTGAATGCCAACTAGCTGGGAGCATGTGGGAGGGATTCTGAACTGCAGGCCAACCTCGGTGCCATCACGAGCTTACCAGACATGGAGGAAGCAGGTGGTATGGCTAATACTCTGGTGCTTGAGTGAGGATACAGAGCTGTGACCCTTTGTGAGCCTCTGGCGCCCCTTCTTAATGTCACCGCTGATTATTAAAAGCTTACCATAGTCCAGAATCTGCAAGCAGAGGAGTTGAGAAGACAGCAGAGCCACACTGGTGTGATGAGGGAAGTGGCAGATGGGAAAGGGCAGCCACTGTCGCCAGGATGGGCAGTAGGAAGAGGGTCAGTGACTTCCACTGTCTCCAGAGAGCAGTGGGGCTGTGGAATGGCCTTCATAAATCTTTTCCTTGTGTTGATAGGAATTGATCACAGACTCAATGTAGGGTATGGTCCTTTACTCCCTAAAAAAGGAGAGAGATGCCCAAATCACTCCTGGATTATAAACATTTGGGAAGTAAATTATTTCAAATTCATAGTGACTCCATACAAGACTCAAACCAAATCTCAGGTTCACAGAAATGGATGACTTCTCAGAGGTCAGTGTGAACAACCCGAGCCCACTCCTCCAGTCACACAGCCACACTCCCCTTCACCGCCACCGCTAGCAGTTGTCTGACAGCCTCCTCGAGCAGGAGGACAGAGACTGCTACTACATCAGCTGTCCTTGAGCTAGCTCACCTGCTTACTCAAGCACACTGTAGCTTGAGAGCCAAAGAAAGCAGCTTTGGGGAGGCCGGTGTGGTGGCACTGGCTACGATTCACAGGTGTTGTGAGCAGGGGATTGCAGGATCGAGGCCAACCTGGATTAGCAGGACTGGGCCTCATGAGGTTAAAAAGATCCCTTGTCGAATGATCAGGTGCCTCAAAGTAGCACAGCTGGTACGGTTTGCTCTGCTTCGAATTTATGAGTGTAGTTACACTTAATAGAACAACCCAGGTGACTAAGGATGGTCCAACCTCAGTCTGTTTGAATAAAAGACTGGTATGGTTCACATAGTCAGGAGGCAGACACAAGTGGATATCAGAGTTTGAGGCAAGCCTCATCTACATAGCAAGTTCCAGGCTAGCTAAGGCTTCAAAGTGAGGTCTCATCTCAAAAAAATTAAACAAAATAATTTTTAAAAGGACTGGAGGGATGGCTCAGCAATTTAGAGCACTGACTGCTCTTCCTCAGGATCCAGGTTTGACTCCCAGTAACCATATGAAACTTACAGCAAGTGCTGGGGATCTGGACACTCTGGCCTCACCGAGCACACATGTAGTTCACAGGCATAATTCAGGCAAAACACTAACAATAAAGTCTTCAAGTAAAATTTTGGTGAGAACTTTGAAAACCTGGGGCTATGCATAGCAGTTGAGCACTCATGTACATCTAGCCACAAGAAAACAAACAACACAAGCAGTTTCCTGTCAGAAACACCATTCGGCAAGTGGCTAGTATATTTCTAAGAGAGTCCATTTGTTAGTGTGCAAGAAAATATACTGAGAAACTAGCTCAGTATATTTGTGCTGAAGTTTGCGTCACACAGACGTGACCCCATTAGTCCCATGGTTGGTTCCATCACTGCTAAGGGTGACGTGAACAAGGTGCTGTTTGTGTAGTTCTGGTCGCTTACTGTTCTGTGAAAGCAGACTGCAGTGCTGCTAATGTGGGTGTTTTGTACACACCCAGAGTCGAGGGGCAGCTCCCGGAAGGACAGAGTCCGTGGGTGTTGACAAGCTTTATAGCTTGGGTTCCTGAAGTTGAGGTGTACGGAAAACGAGTTATTAGCTTTCACGTGGGGTCGGGAGCTATGGCATGGGGCCAGACCTGTGGAAACACTTTCTGATTTGTTTTATGTTTTTCCACCATAATTTTGATGACACTATTTAAAGAAAATTGACTAAAAATTTTCCATTCACTGATTTTGGGTAGCTTTTTGGGGGATGGTGGGGAGCGGAGTCTTTGTGTGTAGTCCTGGCTGACCTAGAGCTCATGAAGACCAGGCTGGCCTCAGCCTCCCAAGTGCTGGGATTAACGGCAGTAGCCATCACACCTGCCAAGATAGGCTTAATTTATCTGTGAAGGTTAATTCATTTCTGTTATATGGATTTTAATAAGAAAATGGATTTATAGATACTAATTCAATTTCCCTAAATTTATTCTATATGGACTTAGATGAATTTTCTCATATTTTCACAATTCAAATATTTATATTTAATGCCAAATGCAAAAAAAATTCATGTTTCCATTTTTATCACCCATTGCTATTGTGCCTACTGGGTCTGGTTTTCATTTTGCTGTTAGTCTAACCAATAATAGCCTTCAGTGAATTTTCTGTGGCTTTAATTTTCCACAATTGGTTAAAAAATAGTAATCACCCAAACCCCCTACCATTTCAGCAGGGCGGCTGGCTCTTCAGAAGATGCTTCCACGTCCCTTCAGACCACATGATAGCAAGCATGAGTGCAAGCCTTCCCCCACCCACGGGGAAATGTAATAACCCAAAGGTTCAGAGCCTCCGCTCTGTCGTGCGTTCATATGAGCCCTTGGGCCTGGGCCCTGCATGTCCTGATAGCATTTACAGCAAGGCTCTACCACGAAGCAAGATTCTGAGTAACACAAGCATGTATGTATGGTTGTCATTGCTGGGGAGACTCTTACCCGGTCAGGGTCACTGCTCAGAGGAGTATCCTGACCACTGCTCTAAGCTTTGGCATGGGAAACCCTGATTTTTGTCTCTTGCTCTGACCACCTGCGCTTCTAAGAGCAAATGGGGAATACTGCTTTAAAATTACTGTGTTCAGTAAACATTAGATGGAGAGAGAGGTGCCAGTTGTGACCTTTATAAATATCATTTTGTCCCTTGCTGTGATCACAGGACTCTGGCAGATGCCCTCACTGGCCTGTCAGCCATGTGCCTGTTCACTTTATCTGTGGCTTGACCACACGCAGCGATCGATACCGGCTGAAGCTTCTGCCCTGGACCGCTCAGTCCCCTGTTCGAGGTTACCATCGGTGGCTTTGTAATTACTGTTCTTTTCCTCACAAAACAAATGTGAGCATCATGTTTACATCGCATCTCTGCAGCGTAGTTGGCTTGACAAAGATGAGCAGGTGTCTCTGGTCTCAGTTTCATAAGCACTTATTTAATCAGGTTTTCAATTGTGCAGCAAGGTGCTCAAAGTAATAGTCTATAAATATATTTAATAGAAACTTGAGTTTGACATTCATGGGCGTAAAGACATGTATTTTTTTTTTAAAGAAATAAGTATTGTGTAACACTATGGCTTTGCTTCTGTAGCCCAAGTAGAGAAACTTCTGGAACGCCATGTAAAAAAGCAATGATTGATTCTGACGCTGATTCATTAAAACTGGATGATTGGCGTTTGGTGACATTCTGTTGCCCGCCCACCCATCACGCTGCAAACCGTGTTTGTGGCAGCACAGGCCGCCTGGTTAGAAGAGTGAGTGCAGCAAGCTCTCTGGCTGGCACCTCTTAATTTTCAGAAGAACTGTCCAAAATTAGAGTAATTTATTTTGCTTTACAGGAGTTTGCCATGTATTGACTTAAATATTGTATTTTGGTAATAAATTTTTTTTGTTAAAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452:ENSMUST00000061586:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.378
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(38.5=21.7)
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGTGGGTATGTGTGCA
R:
CTGGGAAGTGAGCTCTGAGGA
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types