GgaINT0023630 @ galGal4
Intron Retention
Gene
ENSGALG00000004532 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9250539-9251171:+
Coord C1 exon
chr11:9250539-9250673
Coord A exon
chr11:9250674-9250807
Coord C2 exon
chr11:9250808-9251171
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AGTTTTTATTATTTTTTCAGGTT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTGTTCTCTCTGTGGATATGTATGTAGCCATCCCCCTTCCCTGAAGTCCCACATGTGGAAACATGCAAGTGACCAAAATTATAACTACGAACAAGTCAACAAGGCTATTAACGATGCAATTTCACAAAGCAGCAG
Seq A exon
GTAAATCAGGTCTACTTTCAAACCTATTATCTAGAATTTTCAAATGAGCCAATTCTGATCCAAAGTAAAATTCCCATCAAAAAGCAACCACTGTACATTTTGATAGTTGTTTCAAGTTTTTATTATTTTTTCAG
Seq C2 exon
GTTTCAAGGACAGCTTCCTGACAAAACCTTACTAGAAGGCACAGAAGAAAGTACTGTATCTATTCTAGGAAGTTCAGACAACCTGGTGTCCTTTACAGAGTCTACTAACCAGACTAATAATGAAATTTCAGGTTCTGATGAAAATGAAAAGCCTAATTTGATGAATACCTCATGCAGTTTAGAAAAGAACTCCACTCTACCCCATCTTGGCACAGAATACTGTGTGCTTCTCTTCTGCTGCTGTATTTGTGGTTTTGAGTCTACCAACAAAGAAAATCTGCTGGATCATATGAAAGAACATGAGGGTGAAATAATAAATATTATCCTAAATAAGGACCACAGCACAAATCAGAACACAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=19.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGCAATTTCACAAAGCAGC
R:
TTCTGTGCCAAGATGGGGTAGA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]