GgaINT0023630 @ galGal3
Intron Retention
Gene
ENSGALG00000004532 | ZNF507
Description
NA
Coordinates
chr11:10446497-10447129:+
Coord C1 exon
chr11:10446497-10446631
Coord A exon
chr11:10446632-10446765
Coord C2 exon
chr11:10446766-10447129
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AGTTTTTATTATTTTTTCAGGTT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTGTTCTCTCTGTGGATATGTATGTAGCCATCCCCCTTCCCTGAAGTCCCACATGTGGAAACATGCAAGTGACCAAAATTATAACTACGAACAAGTCAACAAGGCTATTAACGATGCAATTTCACAAAGCAGCAG
Seq A exon
GTAAATCAGGTCTACTTTCAAACCTATTATCTAGAATTTTCAAATGAGCCAATTCTGATCCAAAGTAAAATTCCCATCAAAAAGCAACCACTGTACATTTTGATAGTTGTTTCAAGTTTTTATTATTTTTTCAG
Seq C2 exon
GTTTCAAGGACAGCTTCCTGACAAAACCTTACTAGAAGGCACAGAAGAAAGTACTGTATCTATTCTAGGAAGTTCAGACAACCTGGTGTCCTTTACAGAGTCTACTAACCAGACTAATAATGAAATTTCAGGTTCTGATGAAAATGAAAAGCCTAATTTGATGAATACCTCATGCAGTTTAGAAAAGAACTCCACTCTACCCCATCTTGGCACAGAATACTGTGTGCTTCTCTTCTGCTGCTGTATTTGTGGTTTTGAGTCTACCAACAAAGAAAATCTGCTGGATCATATGAAAGAACATGAGGGTGAAATAATAAATATTATCCTAAATAAGGACCACAGCACAAATCAGAACACAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(38.5=21.7)
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=19.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGCAATTTCACAAAGCAGC
R:
TTCTGTGCCAAGATGGGGTAGA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]