BtaINT0166143 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12736734-12737470:+
Coord C1 exon
chr17:12736734-12736925
Coord A exon
chr17:12736926-12737292
Coord C2 exon
chr17:12737293-12737470
Length
367 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCAGCCTCGGTCCTTGCAGGGT
3' ss Score
7.32
Exon sequences
Seq C1 exon
GGGAAGACAGGAAGACCCCCAGTGAATCAAATAGCCCCTCTTCCTCATCCCTCTCAGCTCTGAGTGATTCGGCCAACAGCAAGGACGATTCAGACAGCTCTCAGAAGAACAAGAGTGGCAGTAACCTGCTGGTCATCTCTGTCATGCCTGGGAGCCAGCCCTCCCTGAATAGTGAGGAAAAGCCAGAGAAAG
Seq A exon
GTAAGGGAGGAGGTGGGCTGGGCTGCTCAGTCCTATCCACTCTGCAGGGATGACCCAGTCTTGAGATAAAGCCTGGAGAGAAGTGATGTTGCGAAGCAGATATTAGGCCTGGGAACAGTATAACACATAGCCTCTAAAATTTGCATGTGGATTTTTGACTTAGTTTGCATCGGTATATGGAATGAAAGGATGGAGAGTGTGACATGGATGCCAAAACTGTGCCTTTAACTCATGTTAGCGCAGAGATGCAGGGAGCGGTGCCTGGAACAGTGTAGCTGGGGGGAAAGAGAAGGAGGGTCTCCATCCTACCCCTGCCCTCCTCTCCCTCTGCCCCCTGCACCGGTACACCCAGCCTCGGTCCTTGCAG
Seq C2 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGCCATCTGCAGATCCACCTCATCACCCGGATGTTTGAGTGCGACGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAACATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738:ENSBTAT00000016933:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACAGGAAGACCCCCAGT
R:
GGGGACAGTGTGGCATTTCTT
Band lengths:
354-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development