MmuINT0179948 @ mm9
Intron Retention
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81709497-81710252:+
Coord C1 exon
chr8:81709497-81709688
Coord A exon
chr8:81709689-81710074
Coord C2 exon
chr8:81710075-81710252
Length
386 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCAGCTTCGGTCCTTTCAGGGT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGGATGATAGGAAGACCCCCAGTGAATCGAACAGCCCCTCTTCATCCTCCCTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGCGGGAACAACTTGCTGGTCATCTCTGTGGTGCCCGGGAGCCAGCCCTCACTGAACAACGAGGAAAAGCCAGAGAAAG
Seq A exon
GTGAGAAGGGTAGACGTGGCCTGCTCACCCTGACCACTCTTGTGACCTAGTCTGGAAAGTGACCATTCTCGAGGAAAGCAAGCTGCAGTGTGGTGCTCGCTACCGGAAAGGAGCCCCTTGATTTGTGCTCAAATACGGGGTGGGGACAGGAGGGGGACGTGGACTCTGAAGCTGAACGCTGAGCCTTTTTAGTACGGTGACTTAGGGATGGTGTCTAGACAGAGGTATATGTTACAAGACGCAGGGTTGGAAGGAAGGGGAGTCCCCCCACCCCCACCCCCACCCCCACCCCCACCCCCACCCCTACCCCCACCCCCACCCCGTGCCTGCCTGCCTGCCTGCCGCGCTTCCCCACACACTCCTACACCCAGCTTCGGTCCTTTCAG
Seq C2 exon
GGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-Zfp827:NM_178267:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.665 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=PD(16.2=26.2),PF047807=DUF629=PD(23.7=27.7),PF139091=zf-H2C2_5=PD(0.1=0.0)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=40.0),PF121713=zf-C2H2_jaz=WD(100=36.7),PF139091=zf-H2C2_5=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCCCAGTGAATCGAACA
R:
GGGGACAGTGTGGCATTTCTT
Band lengths:
344-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: